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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2r97 FMN NAD(P)H dehydrogenase (quinone)

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2r97 FMNNAD(P)H dehydrogenase (quinone) / 1.060
4dy4 FMNNAD(P)H dehydrogenase (quinone) / 0.996
3zho FMNNAD(P)H dehydrogenase (quinone) / 0.989
5f12 FMNNAD(P)H dehydrogenase (quinone) / 0.907
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.846
3klb FMNUncharacterized protein / 0.820
4j8p FMNFlavodoxin / 0.800
2r96 FMNNAD(P)H dehydrogenase (quinone) / 0.780
4gi5 FADPutative NAD(P)H dehydrogenase (Quinone) / 0.738
3rpe FADPutative modulator of drug activity / 0.727
5eai FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.721
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.708
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.708
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.703
4r81 FMNPredicted NADH dehydrogenase / 0.703
4bmo FMNProtein NrdI / 0.702
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.698
4n9q FMNFMN-dependent NADH-azoreductase 1 / 0.694
4n65 FMNFMN-dependent NADH-azoreductase 1 / 0.691
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.684
4qoe FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.680
1ycg FMNNitric oxide reductase 1 0.671
2q9u FMNA-type flavoprotein / 0.671
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.670
3n39 FMNProtein NrdI / 0.670
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.668
1ycf FMNNitric oxide reductase 1 0.668
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.666
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.660
1fx1 FMNFlavodoxin / 0.659
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.657
1fue FMNFlavodoxin / 0.655
3n3b FMNProtein NrdI / 0.654
3lcm FADPutative oxidoreductase / 0.653
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.652
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.651
4bmp FMNProtein NrdI / 0.651
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.651
3e4v FMNUncharacterized protein / 0.650
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.650