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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2r86 ATP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2r86 ATP5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase / 0.904
5jqw ADPN5-carboxyaminoimidazole ribonucleotide synthase / 0.711
1z2p ACPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.693
1iah ADPTransient receptor potential cation channel subfamily M member 7 2.7.11.1 0.690
4c5b ADPD-alanine--D-alanine ligase B 6.3.2.4 0.689
3t9f ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.687
3r5f ATPD-alanine--D-alanine ligase / 0.685
3t9e ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.684
4ffm ADPUncharacterized protein / 0.684
1z2n ADPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.683
2io9 ADPBifunctional glutathionylspermidine synthetase/amidase / 0.679
3vpb ADPGlutamate--LysW ligase ArgX 6.3.2 0.677
4mv4 ACPBiotin carboxylase 6.3.4.14 0.675
3t99 ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.672
3lla ACPMyosin heavy chain kinase A 2.7.11.7 0.667
3g8d ADPBiotin carboxylase 6.3.4.14 0.665
3rv4 ADPBiotin carboxylase 6.3.4.14 0.665
4lrj ANPUncharacterized protein / 0.665
4iwy ADPRibosomal protein S6--L-glutamate ligase / 0.664
4mv3 ACPBiotin carboxylase 6.3.4.14 0.664
5c1o ANPD-alanine--D-alanine ligase / 0.664
4o4i ACPTubulin tyrosine ligase / 0.658
4zgn ATPCell division cycle protein 123 / 0.658
4fu0 ADPD-alanine--D-alanine ligase / 0.654
4nzo ANPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.654
4ffl ADPUncharacterized protein / 0.652
3eth ATPN5-carboxyaminoimidazole ribonucleotide synthase / 0.651
3vpc ADPGlutamate--LysW ligase ArgX 6.3.2 0.651
1aux AGSSynapsin-1 / 0.650
4ffr ATPUncharacterized protein / 0.650