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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2r3l SCW Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2r3l SCWCyclin-dependent kinase 2 2.7.11.22 0.822
2r3j SCJCyclin-dependent kinase 2 2.7.11.22 0.775
2r3k SCQCyclin-dependent kinase 2 2.7.11.22 0.764
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2r3q 5SCCyclin-dependent kinase 2 2.7.11.22 0.730
1w0x OLOCyclin-dependent kinase 2 2.7.11.22 0.721
2r3p 3SCCyclin-dependent kinase 2 2.7.11.22 0.721
2r3m SCXCyclin-dependent kinase 2 2.7.11.22 0.716
4kd1 1QKCyclin-dependent kinase 2 2.7.11.22 0.708
2r3r 6SCCyclin-dependent kinase 2 2.7.11.22 0.705
1ckp PVBCyclin-dependent kinase 2 2.7.11.22 0.695
3lfq A28Cyclin-dependent kinase 2 2.7.11.22 0.692
2b54 D05Cyclin-dependent kinase 2 2.7.11.22 0.691
4fks 46KCyclin-dependent kinase 2 2.7.11.22 0.690
2r3o 2SCCyclin-dependent kinase 2 2.7.11.22 0.688
3dog NNNCyclin-dependent kinase 2 2.7.11.22 0.687
2vti LZ3Cyclin-dependent kinase 2 2.7.11.22 0.683
1y91 CT9Cyclin-dependent kinase 2 2.7.11.22 0.679
4ek6 10KCyclin-dependent kinase 2 2.7.11.22 0.676
4fkv 61KCyclin-dependent kinase 2 2.7.11.22 0.676
4fkr 45KCyclin-dependent kinase 2 2.7.11.22 0.675
4bgh 3I6Cyclin-dependent kinase 2 2.7.11.22 0.674
1gii 1PUCyclin-dependent kinase 2 2.7.11.22 0.672
3pj8 404Cyclin-dependent kinase 2 2.7.11.22 0.671
4fki 09KCyclin-dependent kinase 2 2.7.11.22 0.671
3qx2 X63Cyclin-dependent kinase 2 2.7.11.22 0.670
1g5s I17Cyclin-dependent kinase 2 2.7.11.22 0.667
3ddp RC8Cyclin-dependent kinase 2 2.7.11.22 0.667
3r7y Z04Cyclin-dependent kinase 2 2.7.11.22 0.666
1gih 1PUCyclin-dependent kinase 2 2.7.11.22 0.663
3r83 Z14Cyclin-dependent kinase 2 2.7.11.22 0.663
1ke6 LS2Cyclin-dependent kinase 2 2.7.11.22 0.660
4e5f 0N7Polymerase acidic protein / 0.660
3qql X03Cyclin-dependent kinase 2 2.7.11.22 0.659
4fkj 11KCyclin-dependent kinase 2 2.7.11.22 0.659
1unl RRCCyclin-dependent-like kinase 5 2.7.11.1 0.657
1vyz N5BCyclin-dependent kinase 2 2.7.11.22 0.657
2wxv WXVCyclin-dependent kinase 2 2.7.11.22 0.656
3r1y X76Cyclin-dependent kinase 2 2.7.11.22 0.656
3ezr EZRCyclin-dependent kinase 2 2.7.11.22 0.655
3ezv EZVCyclin-dependent kinase 2 2.7.11.22 0.655
1oiq HDUCyclin-dependent kinase 2 2.7.11.22 0.654
2f2c AP9Cyclin-dependent kinase 6 2.7.11.22 0.653
2r3f SC8Cyclin-dependent kinase 2 2.7.11.22 0.653
1ke7 LS3Cyclin-dependent kinase 2 2.7.11.22 0.650
2a4l RRCCyclin-dependent kinase 2 2.7.11.22 0.650
3uli 1N3Cyclin-dependent kinase 2 2.7.11.22 0.650