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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qzs ADP Glycogen synthase 2.4.1.21

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2qzs ADPGlycogen synthase 2.4.1.21 1.085
2r4t ADPGlycogen synthase 2.4.1.21 1.063
2r4u ADPGlycogen synthase 2.4.1.21 1.061
3cx4 ADPGlycogen synthase 2.4.1.21 1.039
3cop ADPGlycogen synthase 2.4.1.21 0.876
1uqt U2FTrehalose-6-phosphate synthase 2.4.1.15 0.777
2iw1 U2FLipopolysaccharide core biosynthesis protein RfaG 2.4 0.743
4f9f GDPPutative glycosyltransferase / 0.738
3af1 GDPPantothenate kinase 2.7.1.33 0.676
4pki ATPActin, alpha skeletal muscle / 0.672
1rzu ADPGlycogen synthase 1 2.4.1.21 0.666
4ys0 ADPProtein translocase subunit SecA / 0.664
3sx2 NADUncharacterized protein / 0.663
4qfy DGTDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.660
2q36 ATPActin, alpha skeletal muscle / 0.654
1mmg AGSMyosin-2 heavy chain / 0.653
3eks ATPActin-5C / 0.653
5ce3 ATPActin / 0.653