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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qx7 NAP Eugenol synthase 1 1.1.1.318

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2qx7 NAPEugenol synthase 1 1.1.1.318 1.262
2qw8 NAPEugenol synthase 1 1.1.1.318 1.180
2r6j NDPEugenol synthase 1 1.1.1.318 1.180
3c3x NAPEugenol synthase 1 1.1.1.318 1.125
3c1o NAPEugenol synthase / 0.821
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.760
2c29 NAPDihydroflavonol 4-reductase / 0.754
2yjz NAPMetalloreductase STEAP4 1.16.1 0.715
2f1k NAPPrephenate dehydrogenase / 0.687
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.679
1lua NAPBifunctional protein MdtA 1.5.1.5 0.676
1o8c NDPProbable acrylyl-CoA reductase AcuI 1.3.1.84 0.672
3wbb NAPMeso-diaminopimelate D-dehydrogenase / 0.668
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.667
4oaq NDPR-specific carbonyl reductase / 0.664
5aq1 NDPGlucose-6-phosphate 1-dehydrogenase / 0.662
4gcm NAPThioredoxin reductase 1.8.1.9 0.660
3p19 NDPPutative blue fluorescent protein / 0.657
3i6q NDPPutative leucoanthocyanidin reductase 1 / 0.655
4yao 2AMNADPH--cytochrome P450 reductase / 0.655
1dap NDPMeso-diaminopimelate D-dehydrogenase 1.4.1.16 0.654
3qdl FMNOxygen-insensitive NADPH nitroreductase / 0.653
4l4x NDPAmphI / 0.652
4h5e YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.650