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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qir COA Aminoglycoside 6-N-acetyltransferase type Ib11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2qir COAAminoglycoside 6-N-acetyltransferase type Ib11 / 1.332
2bue COAAAC(6')-Ib / 1.283
2prb COAAminoglycoside 6-N-acetyltransferase type Ib11 / 1.218
2vqy ACOAAC(6')-Ib / 1.207
1v0c ACOAAC(6')-Ib / 1.201
2ge3 ACOProbable acetyltransferase / 0.879
2vzz SCAPutative succinyl-CoA transferase Rv0802c 2.8.3 0.821
1kuy COTSerotonin N-acetyltransferase / 0.769
1n71 COAAac(6')-Ii protein / 0.744
3s6f COAUncharacterized protein / 0.744
2cy2 ACOProbable acetyltransferase / 0.734
1yre COAUncharacterized protein / 0.731
2vxk COAGlucosamine 6-phosphate acetyltransferase, putative / 0.730
1i12 ACOGlucosamine 6-phosphate N-acetyltransferase / 0.729
4ava ACOAcetyltransferase Pat 2.3.1 0.721
2fxf ACODiamine acetyltransferase 1 / 0.710
3gy9 COAGCN5-related N-acetyltransferase / 0.710
2bei ACODiamine acetyltransferase 2 2.3.1.57 0.706
1cjw COTSerotonin N-acetyltransferase / 0.703
5h84 1VUHistone acetyltransferase KAT2A 2.3.1.48 0.703
1b87 ACOAac(6')-Ii protein / 0.700
1ib1 COTSerotonin N-acetyltransferase / 0.694
3fbu COAAcetyltransferase, GNAT family / 0.694
5kf9 ACOPredicted acetyltransferase / 0.693
1bo4 COAAminoglycoside-(3)-N-acetyltransferase / 0.690
3k9u ACOSpermidine N(1)-acetyltransferase / 0.690
2zpa ACOtRNA(Met) cytidine acetyltransferase TmcA / 0.679
3f8k COAUncharacterized protein / 0.679
1cm0 COAHistone acetyltransferase KAT2B 2.3.1.48 0.676
2jdd ACOProbable acetyltransferase / 0.673
5kf8 ACOPredicted acetyltransferase / 0.673
1l0c COTSerotonin N-acetyltransferase / 0.671
2b58 COADiamine acetyltransferase 1 / 0.670
1kux CA3Serotonin N-acetyltransferase / 0.668
1qsm ACOHistone acetyltransferase HPA2 / 0.664
1bob ACOHistone acetyltransferase type B catalytic subunit / 0.663
1m4d COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.661
2b3v ACODiamine acetyltransferase 1 / 0.661
4r87 COASpermidine N(1)-acetyltransferase / 0.660
1j4j ACOAcetyltransferase 2.3.1 0.659
2bsw CAOProbable acetyltransferase / 0.659
3vwd ACOAlpha-tubulin N-acetyltransferase 1 / 0.659
4if5 ACOAlpha-tubulin N-acetyltransferase 1 / 0.659
5kf1 ACOPredicted acetyltransferase / 0.657
5kf2 ACOPredicted acetyltransferase / 0.657
4bhw 01KHistone acetyltransferase p300 / 0.655
4kvx ACON-terminal acetyltransferase A complex catalytic subunit ard1 2.3.1.88 0.655
3mgd ACOPredicted acetyltransferase / 0.654
3r95 ACOMccE protein / 0.653
4lx9 ACON-alpha-acetyltransferase 2.3.1 0.650
5h86 BCOHistone acetyltransferase KAT2A 2.3.1.48 0.650