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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qa8 GEN Estrogen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2qa8 GENEstrogen receptor / 1.002
1gwq ZTWEstrogen receptor / 0.775
3uud ESTEstrogen receptor / 0.770
1x7j GENEstrogen receptor beta / 0.764
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1x7e 244Estrogen receptor / 0.737
1x76 697Estrogen receptor beta / 0.701
4e5l DBHPolymerase acidic protein / 0.696
1zaf 789Estrogen receptor beta / 0.683
1gwr ESTEstrogen receptor / 0.681
2g5o DRQEstrogen receptor / 0.679
4iw6 1GUEstrogen receptor / 0.655
5auw QUEDeath-associated protein kinase 1 2.7.11.1 0.655