Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2q0d ATP Poly(A) polymerase, putative

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2q0d ATPPoly(A) polymerase, putative / 1.107
2ikf UTPPoly(A) polymerase, putative / 0.855
2q0f UTPPoly(A) polymerase, putative / 0.821
2q0c CTPPoly(A) polymerase, putative / 0.772
3hiy UTPUncharacterized protein / 0.759
4fhp UTPTerminal uridylyltransferase cid1 / 0.718
1r8c UTPCCA-adding enzyme 2.7.7.72 0.707
2q66 ATPPoly(A) polymerase 2.7.7.19 0.704
2nom DUTPoly(A) polymerase, putative / 0.701
1r8b ATPCCA-adding enzyme 2.7.7.72 0.696
4u03 GTPCyclic GMP-AMP synthase / 0.692
3g6x DGTDNA polymerase iota 2.7.7.7 0.686
4df8 0L4DNA polymerase I, thermostable 2.7.7.7 0.686
4dfk 0L5DNA polymerase I, thermostable 2.7.7.7 0.683
2b51 UTPRNA editing complex protein MP57 / 0.676
2b56 UTPRNA editing complex protein MP57 / 0.674
4xj3 GTPCyclic GMP-AMP synthase / 0.673
4xj4 3ATCyclic GMP-AMP synthase / 0.664
4fh5 UTPTerminal uridylyltransferase cid1 / 0.663
4a6a TTPdCTP deaminase 3.5.4.13 0.662
4dtp DGTDNA-directed DNA polymerase / 0.661
4k97 ATPCyclic GMP-AMP synthase / 0.657
4bec ATPType I restriction enzyme EcoR124II R protein 3.1.21.3 0.655