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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2prb COA Aminoglycoside 6-N-acetyltransferase type Ib11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2prb COAAminoglycoside 6-N-acetyltransferase type Ib11 / 1.346
2bue COAAAC(6')-Ib / 1.273
2vqy ACOAAC(6')-Ib / 1.243
1v0c ACOAAC(6')-Ib / 1.220
2qir COAAminoglycoside 6-N-acetyltransferase type Ib11 / 1.218
2ge3 ACOProbable acetyltransferase / 0.843
2vzz SCAPutative succinyl-CoA transferase Rv0802c 2.8.3 0.811
1yre COAUncharacterized protein / 0.759
3k9u ACOSpermidine N(1)-acetyltransferase / 0.748
1kuy COTSerotonin N-acetyltransferase / 0.742
1tiq COASpermidine/spermine N(1)-acetyltransferase / 0.739
1pu9 COAHAT A1 / 0.737
2cy2 ACOProbable acetyltransferase / 0.734
4r87 COASpermidine N(1)-acetyltransferase / 0.731
5kf2 ACOPredicted acetyltransferase / 0.731
4ava ACOAcetyltransferase Pat 2.3.1 0.729
5kf8 COAPredicted acetyltransferase / 0.727
2fxf ACODiamine acetyltransferase 1 / 0.726
4ag7 COAGlucosamine 6-phosphate N-acetyltransferase / 0.719
5h86 BCOHistone acetyltransferase KAT2A 2.3.1.48 0.715
2bei ACODiamine acetyltransferase 2 2.3.1.57 0.713
1bo4 COAAminoglycoside-(3)-N-acetyltransferase / 0.712
2b3v ACODiamine acetyltransferase 1 / 0.711
1ib1 COTSerotonin N-acetyltransferase / 0.710
3gya COAGCN5-related N-acetyltransferase / 0.710
5kf8 ACOPredicted acetyltransferase / 0.708
5kf9 ACOPredicted acetyltransferase / 0.691
3gy9 COAGCN5-related N-acetyltransferase / 0.687
1qsr ACOHAT A1 / 0.686
2bsw CAOProbable acetyltransferase / 0.684
5kf1 ACOPredicted acetyltransferase / 0.682
1cjw COTSerotonin N-acetyltransferase / 0.679
2psw COAN-alpha-acetyltransferase 50 / 0.679
2r8v ACOAmino-acid acetyltransferase / 0.678
3f8k COAUncharacterized protein / 0.677
1l0c COTSerotonin N-acetyltransferase / 0.676
4jwp ACOGCN5-related N-acetyltransferase / 0.671
1cm0 COAHistone acetyltransferase KAT2B 2.3.1.48 0.669
1kux CA3Serotonin N-acetyltransferase / 0.667
2vxk COAGlucosamine 6-phosphate acetyltransferase, putative / 0.667
1s3z COAAminoglycoside N(6')-acetyltransferase type 1 / 0.666
1j4j ACOAcetyltransferase 2.3.1 0.665
4c2y MYAGlycylpeptide N-tetradecanoyltransferase 1 / 0.665
4if5 ACOAlpha-tubulin N-acetyltransferase 1 / 0.665
1m4d COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.664
4u9y COAAlpha-tubulin N-acetyltransferase 1 / 0.664
2yim MC4Probable alpha-methylacyl-CoA racemase Mcr (2-methylacyl-CoA racemase) (2-arylpropionyl-CoA epimerase ) / 0.663
1t3z CAOFormyl-CoA:oxalate CoA-transferase / 0.662
2jdc CAOProbable acetyltransferase / 0.661
2jdd ACOProbable acetyltransferase / 0.660
1m4i COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.659
2x7b COAN-alpha-acetyltransferase 2.3.1 0.659
1xvt COAL-carnitine CoA-transferase / 0.658
4xnh ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.657
2ft0 ACOdTDP-fucosamine acetyltransferase / 0.655
1m1d LYXHAT A1 / 0.653
2ob0 ACON-alpha-acetyltransferase 50 / 0.652
3wxy COAUncharacterized protein / 0.650
4ua3 COAN-alpha-acetyltransferase 40 2.3.1 0.650