Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2pkm ADN Adenosine kinase 2.7.1.20

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2pkm ADNAdenosine kinase 2.7.1.20 1.076
2pkk 2FAAdenosine kinase 2.7.1.20 1.046
4ube 2FAAdenosine kinase 2.7.1.20 1.012
3uq9 TBNPutative adenosine kinase / 0.725
4o8j ADNRNA 3'-terminal phosphate cyclase 6.5.1.4 0.710
3vaq ADNPutative adenosine kinase / 0.701
1v1a KDG2-dehydro-3-deoxygluconokinase 2.7.1.45 0.700
3uq6 ADNPutative adenosine kinase / 0.690
1yf3 SAHDNA adenine methylase / 0.689
4yuz S4MSpermidine synthase, putative / 0.689
3ou2 SAHSAM-dependent methyltransferase / 0.684
3ou6 SAMSAM-dependent methyltransferase / 0.682
5je2 SAHMethyl transferase / 0.679
3vas ADNPutative adenosine kinase / 0.678
2ji9 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.675
4wcx SAMBiotin and thiamin synthesis associated / 0.672
5dxj SFGHistone-arginine methyltransferase CARM1 / 0.672
2ql6 TIZNicotinamide riboside kinase 1 / 0.670
2v7u SAM5'-fluoro-5'-deoxy-adenosine synthase / 0.670
5dx8 SFGHistone-arginine methyltransferase CARM1 / 0.670
2ab8 MTPAdenosine kinase 2.7.1.20 0.669
4eak ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.667
3otx AP5Adenosine kinase, putative / 0.666
5il1 SAMN6-adenosine-methyltransferase 70 kDa subunit / 0.665
2np7 NEAModification methylase TaqI 2.1.1.72 0.664
4o4l GTPTubulin alpha-1B chain / 0.664
1uay ADNOxidoreductase / 0.661
2gl0 ADNUncharacterized protein / 0.661
4xeo A5AAlanine--tRNA ligase, cytoplasmic / 0.661
2x1l ADNMethionine--tRNA ligase / 0.659
3h0w N8MS-adenosylmethionine decarboxylase proenzyme 4.1.1.50 0.657
4p5f AR6Inosine-uridine nucleoside N-ribohydrolase / 0.655
1i24 UPGUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.653
1qrr UPGUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.652
3bgi SAHThiopurine S-methyltransferase 2.1.1.67 0.652
2a14 SAHIndolethylamine N-methyltransferase 2.1.1.49 0.651
2i62 SAHNicotinamide N-methyltransferase 2.1.1.1 0.651
4dsg FADUncharacterized protein / 0.651
1pr5 TBNPurine nucleoside phosphorylase DeoD-type / 0.650