2.250 Å
X-ray
2006-04-04
| Name: | Uncharacterized protein |
|---|---|
| ID: | Q8ZVF7_PYRAE |
| AC: | Q8ZVF7 |
| Organism: | Pyrobaculum aerophilum |
| Reign: | Archaea |
| TaxID: | 178306 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| D | 68 % |
| F | 32 % |
| B-Factor: | 15.067 |
|---|---|
| Number of residues: | 24 |
| Including | |
| Standard Amino Acids: | 22 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.418 | 465.750 |
| % Hydrophobic | % Polar |
|---|---|
| 47.10 | 52.90 |
| According to VolSite | |

| HET Code: | ADN |
|---|---|
| Formula: | C10H13N5O4 |
| Molecular weight: | 267.241 g/mol |
| DrugBank ID: | DB00640 |
| Buried Surface Area: | 64.35 % |
| Polar Surface area: | 139.54 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 8 |
| H-Bond Donors: | 4 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 2 |
| X | Y | Z |
|---|---|---|
| -15.1536 | -14.3768 | 3.08237 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2' | OD1 | ASN- 20 | 2.58 | 169.61 | H-Bond (Ligand Donor) |
| C4' | CB | PHE- 28 | 4.47 | 0 | Hydrophobic |
| C1' | CB | PHE- 28 | 3.98 | 0 | Hydrophobic |
| DuAr | DuAr | PHE- 28 | 3.75 | 0 | Aromatic Face/Face |
| DuAr | DuAr | TRP- 95 | 3.5 | 0 | Aromatic Face/Face |
| C2' | CZ3 | TRP- 95 | 4.28 | 0 | Hydrophobic |
| O3' | N | ALA- 117 | 2.62 | 151.33 | H-Bond (Protein Donor) |
| C3' | CB | ALA- 117 | 4.29 | 0 | Hydrophobic |
| N1 | OH | TYR- 165 | 2.6 | 165.87 | H-Bond (Protein Donor) |
| N3 | O | HOH- 909 | 2.83 | 179.99 | H-Bond (Protein Donor) |