2.250 Å
X-ray
2006-04-04
Name: | Uncharacterized protein |
---|---|
ID: | Q8ZVF7_PYRAE |
AC: | Q8ZVF7 |
Organism: | Pyrobaculum aerophilum |
Reign: | Archaea |
TaxID: | 178306 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
D | 68 % |
F | 32 % |
B-Factor: | 15.067 |
---|---|
Number of residues: | 24 |
Including | |
Standard Amino Acids: | 22 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.418 | 465.750 |
% Hydrophobic | % Polar |
---|---|
47.10 | 52.90 |
According to VolSite |
HET Code: | ADN |
---|---|
Formula: | C10H13N5O4 |
Molecular weight: | 267.241 g/mol |
DrugBank ID: | DB00640 |
Buried Surface Area: | 64.35 % |
Polar Surface area: | 139.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
-15.1536 | -14.3768 | 3.08237 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2' | OD1 | ASN- 20 | 2.58 | 169.61 | H-Bond (Ligand Donor) |
C4' | CB | PHE- 28 | 4.47 | 0 | Hydrophobic |
C1' | CB | PHE- 28 | 3.98 | 0 | Hydrophobic |
DuAr | DuAr | PHE- 28 | 3.75 | 0 | Aromatic Face/Face |
DuAr | DuAr | TRP- 95 | 3.5 | 0 | Aromatic Face/Face |
C2' | CZ3 | TRP- 95 | 4.28 | 0 | Hydrophobic |
O3' | N | ALA- 117 | 2.62 | 151.33 | H-Bond (Protein Donor) |
C3' | CB | ALA- 117 | 4.29 | 0 | Hydrophobic |
N1 | OH | TYR- 165 | 2.6 | 165.87 | H-Bond (Protein Donor) |
N3 | O | HOH- 909 | 2.83 | 179.99 | H-Bond (Protein Donor) |