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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2gl0 ADN Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2gl0 ADNUncharacterized protein / 0.888
2pkk 2FAAdenosine kinase 2.7.1.20 0.670
1pag FMPAntiviral protein I 3.2.2.22 0.663
2pkm ADNAdenosine kinase 2.7.1.20 0.661
1fyf SSAThreonine--tRNA ligase 6.1.1.3 0.660
1c0a AMOAspartate--tRNA ligase / 0.655
3a5z KAAElongation factor P--(R)-beta-lysine ligase / 0.655