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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2pdg 47D Aldose reductase 1.1.1.21

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2pdg 47DAldose reductase 1.1.1.21 1.081
2pdn 47DAldose reductase 1.1.1.21 1.005
2hvo ZSTAldose reductase 1.1.1.21 0.997
2pdm ZSTAldose reductase 1.1.1.21 0.994
2dux ZSTAldose reductase 1.1.1.21 0.963
1z3n 3NAAldose reductase 1.1.1.21 0.917
2pdh 47DAldose reductase 1.1.1.21 0.906
3mb9 ZSTAldose reductase 1.1.1.21 0.852
3m0i ZSTAldose reductase 1.1.1.21 0.841
2pdx ZSTAldose reductase 1.1.1.21 0.839
3g5e Q74Aldose reductase 1.1.1.21 0.839
1frb ZSTAldose reductase-related protein 2 / 0.832
2pdi ZSTAldose reductase 1.1.1.21 0.827
2pd5 ZSTAldose reductase 1.1.1.21 0.811
2fz9 ZSTAldose reductase 1.1.1.21 0.796
3len ZSTAldose reductase 1.1.1.21 0.790
2hvn ZSTAldose reductase 1.1.1.21 0.777
4gca 2X9Aldose reductase 1.1.1.21 0.775
2fz8 ZSTAldose reductase 1.1.1.21 0.768
2duz ZSTAldose reductase 1.1.1.21 0.747
2pdq 47DAldose reductase 1.1.1.21 0.740
3ld5 LDTAldose reductase 1.1.1.21 0.732
2pdb ZSTAldose reductase 1.1.1.21 0.730
2dv0 ZSTAldose reductase 1.1.1.21 0.728
3ghu LDTAldose reductase 1.1.1.21 0.721
3lbo LDTAldose reductase 1.1.1.21 0.718
2pdf ZSTAldose reductase 1.1.1.21 0.710
2pzn 393Aldose reductase 1.1.1.21 0.702
2pdc 393Aldose reductase 1.1.1.21 0.701
3ght LDTAldose reductase 1.1.1.21 0.697
3t42 3T4Aldose reductase 1.1.1.21 0.696
3mc5 393Aldose reductase 1.1.1.21 0.691
2ikj 393Aldose reductase 1.1.1.21 0.677
2hv5 ZSTAldose reductase 1.1.1.21 0.675
2nvc ITAAldose reductase 1.1.1.21 0.674
2pdp 393Aldose reductase 1.1.1.21 0.673
2pdj 393Aldose reductase 1.1.1.21 0.672
2pdu 393Aldose reductase 1.1.1.21 0.672
1t40 ID5Aldose reductase 1.1.1.21 0.667
2qxw LDTAldose reductase 1.1.1.21 0.659
3lz5 LDTAldose reductase 1.1.1.21 0.658
2inz OHPAldose reductase 1.1.1.21 0.657
1z89 62PAldose reductase 1.1.1.21 0.656
4yu1 53NAldose reductase 1.1.1.21 0.653