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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2oy0 SAH Genome polyprotein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2oy0 SAHGenome polyprotein / 0.911
3lkz SFGGenome polyprotein / 0.757
2px2 SAHGenome polyprotein 2.7.7.48 0.753
3emd SFGMethyltransferase / 0.733
4ctk SAMGenome polyprotein / 0.725
4ctj SAMGenome polyprotein / 0.723
5jjr SAHGenome polyprotein / 0.717
3p97 SAMGenome polyprotein 2.1.1.56 0.705
4k6m SAHGenome polyprotein / 0.705
4uck SAMLarge structural protein / 0.705
5dto SAHGenome polyprotein / 0.696
5ccb SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.693
3p8z SAHGenome polyprotein 2.1.1.56 0.688
3p8z 36AGenome polyprotein 2.1.1.56 0.682
3a26 MTAtRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase / 0.675
2pxa SAHGenome polyprotein 2.7.7.48 0.673
3c3y SAHO-methyltransferase / 0.672
2i9k SAHModification methylase HhaI 2.1.1.37 0.671
2z6u SAHModification methylase HhaI 2.1.1.37 0.670
2plw SAMRibosomal RNA methyltransferase, putative / 0.669
5ccx SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.668
3eld SFGMethyltransferase / 0.666
1yf3 SAHDNA adenine methylase / 0.663
3evc SAHGenome polyprotein 2.1.1.56 0.663
1i9g SAMtRNA (adenine(58)-N(1))-methyltransferase TrmI / 0.661
2nyu SAMrRNA methyltransferase 2, mitochondrial / 0.661
2p1d SAHGenome polyprotein 2.7.7.48 0.661
2zth SAMCatechol O-methyltransferase 2.1.1.6 0.661
2g1p SAHDNA adenine methylase 2.1.1.72 0.660
4yv2 S4MSpermidine synthase, putative / 0.660
2hmv ADPKtr system potassium uptake protein A / 0.658
2p35 SAHTrans-aconitate 2-methyltransferase / 0.658
3u81 SAHCatechol O-methyltransferase 2.1.1.6 0.658
4iv8 SAMPhosphoethanolamine N-methyltransferase,putative / 0.658
1bxk NADdTDP-glucose 4,6-dehydratase 2 / 0.657
2c7q SAHModification methylase HhaI 2.1.1.37 0.657
2o06 MTASpermidine synthase 2.5.1.16 0.657
2qe6 SAMUncharacterized protein / 0.657
2uyh SAHModification methylase HhaI 2.1.1.37 0.657
1qan SAHrRNA adenine N-6-methyltransferase 2.1.1.184 0.656
4rtk SAHDNA adenine methylase 2.1.1.72 0.655
5jjs SAHGenome polyprotein / 0.655
1g1a NADdTDP-glucose 4,6-dehydratase / 0.654
2f8l SAMLmo1582 protein / 0.654
2hms NAIKtr system potassium uptake protein A / 0.654
2px5 SAHGenome polyprotein 2.7.7.48 0.653
2ytz SAHtRNA (guanine(26)-N(2))-dimethyltransferase / 0.653
2xyr SFGReplicase polyprotein 1ab 2.1.1 0.652
2yqz SAMUncharacterized protein / 0.652
2yxl SFG450aa long hypothetical fmu protein / 0.652
3ely SAHMethyltransferase / 0.652
3eva SAHGenome polyprotein 2.1.1.56 0.652
1mht SAHModification methylase HhaI 2.1.1.37 0.651
2np6 NEAModification methylase TaqI 2.1.1.72 0.651
4wxx SAHDNA (cytosine-5)-methyltransferase 1 2.1.1.37 0.651
5e9w SAHmRNA cap guanine-N7 methyltransferase 2.1.1.56 0.651
5je4 SAHMethyl transferase / 0.651