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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2owu SAH Diphthine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2owu SAHDiphthine synthase / 1.091
2owk SAHDiphthine synthase / 1.081
2ehl SAHDiphthine synthase / 1.078
2e07 SAHDiphthine synthase / 1.074
2e7r SAHDiphthine synthase / 1.074
2egb SAHDiphthine synthase / 1.074
2dxw SAHDiphthine synthase / 1.073
2z6r SAHDiphthine synthase / 1.073
2e15 SAHDiphthine synthase / 1.072
2ejj SAHDiphthine synthase / 1.068
2dek SAHDiphthine synthase / 1.066
2ek7 SAHDiphthine synthase / 1.062
2eni SAHDiphthine synthase / 1.062
2hut SAHDiphthine synthase / 1.062
2dsg SAHDiphthine synthase / 1.061
2e08 SAHDiphthine synthase / 1.061
2p6i SAHDiphthine synthase / 1.061
2p9d SAHDiphthine synthase / 1.061
2dxv SAHDiphthine synthase / 1.060
2e17 SAHDiphthine synthase / 1.060
2p6k SAHDiphthine synthase / 1.060
2eh2 SAHDiphthine synthase / 1.059
2owv SAHDiphthine synthase / 1.059
2dv5 SAHDiphthine synthase / 1.058
2dxx SAHDiphthine synthase / 1.058
2e4n SAHDiphthine synthase / 1.058
2eeq SAHDiphthine synthase / 1.058
2ele SAHDiphthine synthase / 1.058
1wng SAHDiphthine synthase / 1.057
2huv SAHDiphthine synthase / 1.057
2p5f SAHDiphthine synthase / 1.057
2e8r SAHDiphthine synthase / 1.056
2eh5 SAHDiphthine synthase / 1.056
2el3 SAHDiphthine synthase / 1.056
2egs SAHDiphthine synthase / 1.055
2ek2 SAHDiphthine synthase / 1.055
2eh4 SAHDiphthine synthase / 1.054
2el0 SAHDiphthine synthase / 1.054
2emr SAHDiphthine synthase / 1.054
2en5 SAHDiphthine synthase / 1.054
2e8s SAHDiphthine synthase / 1.053
2egl SAHDiphthine synthase / 1.053
2ek4 SAHDiphthine synthase / 1.053
2huq SAHDiphthine synthase / 1.053
2pcg SAHDiphthine synthase / 1.053
2pb5 SAHDiphthine synthase / 1.052
2p2x SAHDiphthine synthase / 1.049
2pca SAHDiphthine synthase / 1.049
2dv3 SAHDiphthine synthase / 1.048
2e16 SAHDiphthine synthase / 1.048
2eld SAHDiphthine synthase / 1.048
2eka SAHDiphthine synthase / 1.047
2dv7 SAHDiphthine synthase / 1.046
2dsh SAHDiphthine synthase / 1.044
2e8h SAHDiphthine synthase / 1.043
2e8q SAHDiphthine synthase / 1.042
2owg SAHDiphthine synthase / 1.042
2pcm SAHDiphthine synthase / 1.040
2ed5 SAHDiphthine synthase / 1.038
2ejk SAHDiphthine synthase / 1.035
2ek3 SAHDiphthine synthase / 1.035
2pb6 SAHDiphthine synthase / 1.032
2p5c SAHDiphthine synthase / 1.028
2dv4 SAHDiphthine synthase / 1.024
2p6l SAHDiphthine synthase / 1.023
2pch SAHDiphthine synthase / 1.020
2emu SAHDiphthine synthase / 1.019
1vce SAHDiphthine synthase / 1.018
2p6d SAHDiphthine synthase / 1.010
2pck SAHDiphthine synthase / 1.008
2pb4 SAHDiphthine synthase / 0.991
2dsi SAHDiphthine synthase / 0.983
2hux SAHDiphthine synthase / 0.973
2pci SAHDiphthine synthase / 0.973
2hr8 SAHDiphthine synthase / 0.913
2owf SAHDiphthine synthase / 0.748
2egv SAMRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.720
2ejz SAHDiphthine synthase / 0.711
1cbf SAHCobalt-precorrin-4 C(11)-methyltransferase 2.1.1.271 0.706
2ed3 SAHDiphthine synthase / 0.701
4l2i FADElectron transfer flavoprotein alpha/beta-subunit / 0.699
2e0n SAHPrecorrin-2 C20-methyltransferase / 0.696
2ybo SAHMethyltransferase / 0.696
2qbu SAHPrecorrin-2 methyltransferase / 0.689
5a7y SAHtRNA (adenine(9)-N1)-methyltransferase 2.1.1.218 0.688
1jgt APCCarboxyethyl-arginine beta-lactam-synthase 6.3.3.4 0.687
3s3t ATPUniversal stress protein / 0.682
2hma SAMtRNA-specific 2-thiouridylase MnmA / 0.674
1j1z ATPArgininosuccinate synthase / 0.673
4kpu FADElectron transfer flavoprotein alpha/beta-subunit / 0.666
3n4k SAHtRNA (cytidine(34)-2'-O)-methyltransferase / 0.664
1kor ANPArgininosuccinate synthase / 0.660
3ndc SAHPrecorrin-4 C(11)-methyltransferase 2.1.1.133 0.660
4oav ACP2-5A-dependent ribonuclease 3.1.26 0.660
3oii SAHRibosomal RNA small subunit methyltransferase NEP1 / 0.659
1s4d SAHUroporphyrinogen-III C-methyltransferase 2.1.1.107 0.658
4rr8 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.654
2zvc SAHPrecorrin-3 C17-methyltransferase / 0.652
3pd2 A3SThreonine--tRNA ligase 6.1.1.3 0.651
4fak SAMRibosomal RNA large subunit methyltransferase H / 0.651