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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ouz C3D Estrogen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ouz C3DEstrogen receptor / 1.365
1uom PTIEstrogen receptor / 1.039
1sj0 E4DEstrogen receptor / 0.969
1xp9 AIJEstrogen receptor / 0.918
2jf9 OHTEstrogen receptor / 0.822
1err RALEstrogen receptor / 0.805
1yim CM4Estrogen receptor / 0.804
1xp6 AIUEstrogen receptor / 0.801
1xp1 AIHEstrogen receptor / 0.780
1xpc AITEstrogen receptor / 0.773
1yin CM3Estrogen receptor / 0.728
2jfa RALEstrogen receptor / 0.703
2ayr L4GEstrogen receptor / 0.702
4iw6 1GUEstrogen receptor / 0.680
2gpv OHTEstrogen-related receptor gamma / 0.669
4e5f 0N7Polymerase acidic protein / 0.667
1qkn RALEstrogen receptor beta / 0.662
4e5i 0N9Polymerase acidic protein / 0.660
2qe4 JJ3Estrogen receptor / 0.659
2bj4 OHTEstrogen receptor / 0.657