Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2np9 YE1 (3,5-dihydroxyphenyl)acetyl-CoA 1,2-dioxygenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2np9 YE1(3,5-dihydroxyphenyl)acetyl-CoA 1,2-dioxygenase / 1.397
4ylh YE1(3,5-dihydroxyphenyl)acetyl-CoA 1,2-dioxygenase / 1.006
2pg8 YE1(3,5-dihydroxyphenyl)acetyl-CoA 1,2-dioxygenase / 0.877
4qii 2NE1,4-dihydroxy-2-naphthoyl-CoA synthase / 0.747
4i42 1HA1,4-dihydroxy-2-naphthoyl-CoA synthase / 0.724
1jxz BCA4-chlorobenzoyl coenzyme A dehalogenase 3.8.1.7 0.723
4qij 1HA1,4-dihydroxy-2-naphthoyl-CoA synthase / 0.720
4i4z 2NE1,4-dihydroxy-2-naphthoyl-CoA synthase / 0.717
1nzy BCA4-chlorobenzoyl coenzyme A dehalogenase 3.8.1.7 0.715
3t88 S0N1,4-dihydroxy-2-naphthoyl-CoA synthase / 0.710
3glm COOGlutaconyl-CoA decarboxylase alpha subunit / 0.698
4i52 1HA1,4-dihydroxy-2-naphthoyl-CoA synthase / 0.686
1dub CAAEnoyl-CoA hydratase, mitochondrial 4.2.1.17 0.684
1mj3 HXCEnoyl-CoA hydratase, mitochondrial 4.2.1.17 0.677