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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2nod H4B Nitric oxide synthase, inducible 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2nod H4BNitric oxide synthase, inducible 1.14.13.39 0.763
3nod H4BNitric oxide synthase, inducible 1.14.13.39 0.755
4e5i 0N9Polymerase acidic protein / 0.744
1qom H4BNitric oxide synthase, inducible 1.14.13.39 0.721
3e6t H4BNitric oxide synthase, inducible 1.14.13.39 0.697
1m8e H4BNitric oxide synthase, inducible 1.14.13.39 0.683
3w6h AZMCarbonic anhydrase 1 4.2.1.1 0.677
1vaf H4BNitric oxide synthase, inducible 1.14.13.39 0.676
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.675
1m8d H4BNitric oxide synthase, inducible 1.14.13.39 0.673
1m8h H4BNitric oxide synthase, inducible 1.14.13.39 0.669
2eg2 ATPNitrogen regulatory protein P-II / 0.665
1m8i H4BNitric oxide synthase, inducible 1.14.13.39 0.660
1m9t H4BNitric oxide synthase, inducible 1.14.13.39 0.660
4e5f 0N7Polymerase acidic protein / 0.660
3e67 H4BNitric oxide synthase, inducible 1.14.13.39 0.658
3jt4 H4BNitric oxide synthase, brain 1.14.13.39 0.654
3jt8 H4BNitric oxide synthase, brain 1.14.13.39 0.654
3av7 KYAUncharacterized protein / 0.653
3jx2 H4BNitric oxide synthase, brain 1.14.13.39 0.653
3k31 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.653
4fw0 H4BNitric oxide synthase, brain 1.14.13.39 0.653
3uft H4BNitric oxide synthase, brain 1.14.13.39 0.652
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.651
3q99 H4BNitric oxide synthase, brain 1.14.13.39 0.651
4eux H4BNitric oxide synthase, brain 1.14.13.39 0.651
1p6j H4BNitric oxide synthase, brain 1.14.13.39 0.650