1.720 Å
X-ray
2007-02-27
Name: | Nitrogen regulatory protein P-II |
---|---|
ID: | GLNB_AQUAE |
AC: | O66513 |
Organism: | Aquifex aeolicus |
Reign: | Bacteria |
TaxID: | 224324 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 23.973 |
---|---|
Number of residues: | 17 |
Including | |
Standard Amino Acids: | 17 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.414 | 263.250 |
% Hydrophobic | % Polar |
---|---|
60.26 | 39.74 |
According to VolSite |
HET Code: | ATP |
---|---|
Formula: | C10H12N5O13P3 |
Molecular weight: | 503.149 g/mol |
DrugBank ID: | DB00171 |
Buried Surface Area: | 40.06 % |
Polar Surface area: | 319.88 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 17 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
15.95 | 26.0062 | 4.40503 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C4' | CG2 | ILE- 7 | 3.69 | 0 | Hydrophobic |
C1' | CG2 | ILE- 7 | 3.95 | 0 | Hydrophobic |
O2G | N | GLY- 87 | 2.65 | 164.47 | H-Bond (Protein Donor) |
O1B | NZ | LYS- 90 | 3.73 | 0 | Ionic (Protein Cationic) |