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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2jl1 NAP Triphenylmethane reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2jl1 NAPTriphenylmethane reductase / 1.275
2vrb NAPTriphenylmethane reductase / 1.046
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.799
1n7h NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.779
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.740
1t2a NDPGDP-mannose 4,6 dehydratase 4.2.1.47 0.716
1hdo NAPFlavin reductase (NADPH) / 0.707
4qed NAPElxO / 0.699
3pef NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.696
2gn8 NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.693
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.677
4hnh NAPNAD-dependent epimerase/dehydratase / 0.674
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.673
3gwf NAPCyclohexanone monooxygenase / 0.671
4hxy NDPPlm1 / 0.670
3s5w NAPL-ornithine N(5)-monooxygenase / 0.669
2yut NAPPutative short-chain oxidoreductase / 0.665
5cku NAPL-ornithine N(5)-monooxygenase / 0.663
4jbi NDPAlcohol dehydrogenase (Zinc) / 0.661
3h2s NDPPutative NADH-flavin reductase / 0.660
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.660
4xqc NADHomospermidine synthase 2.5.1.44 0.660
4xrg NADHomospermidine synthase 2.5.1.44 0.657
4xq9 NADHomospermidine synthase 2.5.1.44 0.656
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.654
5d2e NAPMlnE / 0.653
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.651