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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2j3k NAP NADPH-dependent oxidoreductase 2-alkenal reductase 1.3.1.74

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2j3k NAPNADPH-dependent oxidoreductase 2-alkenal reductase 1.3.1.74 1.160
4hfm NAP2-alkenal reductase (NADP(+)-dependent) / 0.842
4b7x NAPProbable oxidoreductase / 0.797
2vna NAPProstaglandin reductase 2 1.3.1.48 0.768
2zb3 NDPProstaglandin reductase 2 1.3.1.48 0.759
1yb5 NAPQuinone oxidoreductase 1.6.5.5 0.757
2y05 NAPProstaglandin reductase 1 / 0.745
2c0c NAPProstaglandin reductase 3 1 0.734
3tqh NDPQuinone oxidoreductase / 0.726
4w6z 8IDAlcohol dehydrogenase 1 1.1.1.1 0.714
2o4c NADErythronate-4-phosphate dehydrogenase / 0.711
4j49 NADUncharacterized protein / 0.709
4jk3 NADUncharacterized protein / 0.709
4e5m NAPPhosphonate dehydrogenase 1.20.1.1 0.701
4ywj NAD4-hydroxy-tetrahydrodipicolinate reductase / 0.695
1zh8 NAPUncharacterized protein / 0.693
4j43 NADUncharacterized protein / 0.692
4e5p NADPhosphonate dehydrogenase 1.20.1.1 0.690
5doz NDPJamJ / 0.690
5kcp NAJAlcohol dehydrogenase E chain 1.1.1.1 0.682
4gkv NADAlcohol dehydrogenase, propanol-preferring 1.1.1.1 0.677
3wyc NAPMeso-diaminopimelate D-dehydrogenase 1.4.1.16 0.673
5mdh NADMalate dehydrogenase, cytoplasmic 1.1.1.37 0.672
1guf NDPEnoyl-[acyl-carrier-protein] reductase 1, mitochondrial 1.3.1.10 0.670
4oaq NDPR-specific carbonyl reductase / 0.670
4j49 NAIUncharacterized protein / 0.668
4nfs NAJAlcohol dehydrogenase E chain 1.1.1.1 0.668
4jbi NDPAlcohol dehydrogenase (Zinc) / 0.666
3jv7 NADSecondary alcohol dehydrogenase / 0.665
3wle NAD(R)-specific carbonyl reductase / 0.664
4e5n NADPhosphonate dehydrogenase 1.20.1.1 0.664
4j4b NAIUncharacterized protein / 0.664
5iw4 NADNADH pyrophosphatase / 0.664
5ees NAP4-hydroxy-tetrahydrodipicolinate reductase / 0.662
2ixa NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.660
2j3i NAPNADPH-dependent oxidoreductase 2-alkenal reductase 1.3.1.74 0.659
4dlb NADS-(hydroxymethyl)glutathione dehydrogenase / 0.659
5a02 NAPGlucose-fructose oxidoreductase / 0.658
5a04 NDPGlucose-fructose oxidoreductase / 0.658
2eer NADNAD-dependent alcohol dehydrogenase 1.1.1.1 0.656
3zok NAD3-dehydroquinate synthase, chloroplastic 4.2.3.4 0.655
1agn NADAlcohol dehydrogenase class 4 mu/sigma chain 1.1.1.1 0.654
4ebf NADPhosphonate dehydrogenase 1.20.1.1 0.654
4xqc NADHomospermidine synthase 2.5.1.44 0.654
1uxj NADMalate dehydrogenase / 0.653
4plp NADHomospermidine synthase 2.5.1.44 0.653
5kjc NAJAlcohol dehydrogenase E chain 1.1.1.1 0.653
5env NADAlcohol dehydrogenase 1 1.1.1.1 0.652
1pzh NADLactate dehydrogenase / 0.651
4tvb NADHomospermidine synthase 2.5.1.44 0.651