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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2izt 23D Casein kinase I isoform gamma-3 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2izt 23DCasein kinase I isoform gamma-3 2.7.11.1 0.953
2izu P01Casein kinase I isoform gamma-3 2.7.11.1 0.774
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2cmw OLPCasein kinase I isoform gamma-1 2.7.11.1 0.717
2izs BRQCasein kinase I isoform gamma-3 2.7.11.1 0.673
3ddp RC8Cyclin-dependent kinase 2 2.7.11.22 0.663
4e5f 0N7Polymerase acidic protein / 0.660
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.659
2bdf 24AProto-oncogene tyrosine-protein kinase Src 2.7.10.2 0.658