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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ipj FFA Aldo-keto reductase family 1 member C2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ipj FFAAldo-keto reductase family 1 member C2 / 1.023
4e5i 0N9Polymerase acidic protein / 0.744
4e5l DBHPolymerase acidic protein / 0.715
1fdu ESTEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.672
2fzk CTPAspartate carbamoyltransferase regulatory chain / 0.667
3gki CLRNiemann-Pick C1 protein / 0.667
1zhz ERGOxysterol-binding protein homolog 4 / 0.663
4e5f 0N7Polymerase acidic protein / 0.660
1zhw HC2Oxysterol-binding protein homolog 4 / 0.659
2yja ESTEstrogen receptor / 0.653