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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2iml FMN Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2iml FMNUncharacterized protein / 1.044
2nr4 FMNConserved protein / 0.876
2ptf FMNUncharacterized protein MTH_863 / 0.797
4b4d FADFerredoxin-NADP reductase / 0.757
2bgi FADNADPH:ferredoxin reductase / 0.752
4k1x FADNADPH:ferredoxin reductase / 0.745
2vnj FADNADPH:ferredoxin reductase / 0.744
1cqx FADFlavohemoprotein / 0.724
2gpj FADSiderophore-interacting protein / 0.723
3qe2 FADNADPH--cytochrome P450 reductase / 0.722
2bf4 FADNADPH--cytochrome P450 reductase / 0.719
2qdx FADFerredoxin--NADP+ reductase / 0.719
1h42 FADFerredoxin--NADP reductase 1.18.1.2 0.717
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.716
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.715
3bnk FMNFlavoredoxin / 0.714
3qfc FADNADPH--cytochrome P450 reductase / 0.713
2pia FMNPhthalate dioxygenase reductase / 0.708
2vnh FADNADPH:ferredoxin reductase / 0.708
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.708
4yao FADNADPH--cytochrome P450 reductase / 0.708
4f07 FADStyrene monooxygenase component 2 / 0.706
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.705
4y9u FADNADPH--cytochrome P450 reductase / 0.703
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.702
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.702
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.702
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.702
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.701
1w35 FADFerredoxin--NADP reductase 1.18.1.2 0.701
4c43 FADFerredoxin--NADP reductase 1.18.1.2 0.700
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.698
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.697
1sm4 FADFerredoxin--NADP reductase / 0.696
2bn4 FADNADPH--cytochrome P450 reductase / 0.696
1amo FADNADPH--cytochrome P450 reductase / 0.692
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.691
3qfr FADNADPH--cytochrome P450 reductase / 0.691
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.688
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.688
1gaq FADFerredoxin / 0.687
3ojw FADNADPH--cytochrome P450 reductase / 0.685
1ja0 FADNADPH--cytochrome P450 reductase / 0.683
3qfs FADNADPH--cytochrome P450 reductase / 0.683
3a3b RBFLumazine protein / 0.682
1eje FMNProtein MTH_152 / 0.680
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.680
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.680
1tll FADNitric oxide synthase, brain 1.14.13.39 0.679
2ou5 FMNPyridoxamine 5'-phosphate oxidase-related FMN-binding protein / 0.677
1sbz FMNProbable UbiX-like flavin prenyltransferase / 0.676
1pkv RBFRiboflavin synthase 2.5.1.9 0.675
2rc5 FADFerredoxin--NADP reductase / 0.672
4rhe FMNFlavin prenyltransferase UbiX / 0.672
1e62 FADFerredoxin--NADP reductase 1.18.1.2 0.671
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.670
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.670
3kap FMNFlavodoxin / 0.669
5cho FADFlavin reductase / 0.669
1ja1 FADNADPH--cytochrome P450 reductase / 0.668
4yau FADNADPH--cytochrome P450 reductase / 0.667
1cnf FADNitrate reductase [NADH] 1.7.1.1 0.665
1e64 FADFerredoxin--NADP reductase 1.18.1.2 0.665
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.664
3e4v FMNUncharacterized protein / 0.661
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.660
2igo FADPyranose 2-oxidase / 0.660
3pl8 FADPyranose 2-oxidase / 0.659
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.658
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.656
1n9l FMNPutative blue light receptor / 0.656
1usc FMNMonooxygenase / 0.652
1czn FMNFlavodoxin / 0.651
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.651
1ja0 FMNNADPH--cytochrome P450 reductase / 0.650