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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2hay FMN Putative NAD(P)H-flavin oxidoreductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2hay FMNPutative NAD(P)H-flavin oxidoreductase / 1.155
3x22 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.923
1ylu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.894
1icu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.881
1kqb FMNOxygen-insensitive NAD(P)H nitroreductase / 0.869
3of4 FMNNitroreductase / 0.856
1kqc FMNOxygen-insensitive NAD(P)H nitroreductase / 0.855
1kqd FMNOxygen-insensitive NAD(P)H nitroreductase / 0.854
2wzv FMNNitroreductase NfnB / 0.854
2wzw FMNNitroreductase NfnB / 0.854
1nec FMNOxygen-insensitive NAD(P)H nitroreductase 1 0.847
1oo5 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.842
1ylr FMNOxygen-insensitive NAD(P)H nitroreductase / 0.834
3x21 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.817
1yki FMNOxygen-insensitive NAD(P)H nitroreductase / 0.816
1oon FMNOxygen-insensitive NAD(P)H nitroreductase / 0.808
1ooq FMNOxygen-insensitive NAD(P)H nitroreductase / 0.808
1icv FMNOxygen-insensitive NAD(P)H nitroreductase / 0.797
3eo8 FMNPutative nitroreductase / 0.784
3bem FMNPutative NAD(P)H nitroreductase MhqN 1 0.782
3koq FMNPutative nitroreductase / 0.779
1vfr FMNMajor NAD(P)H-flavin oxidoreductase 1.6.99 0.776
3e39 FMNNitroreductase / 0.775
3qdl FMNOxygen-insensitive NADPH nitroreductase / 0.775
1ds7 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.774
4qly FMNEnone reductase CLA-ER / 0.769
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.745
4xoo FMNCoenzyme F420:L-glutamate ligase / 0.745
2fre FMNNAD(P)H-flavin oxidoreductase / 0.744
4ttc FMNIodotyrosine deiodinase 1 / 0.741
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 0.732
3hj9 FMNUncharacterized protein / 0.728
3gag FMNPutative NADH dehydrogenase NAD(P)H nitroreductase / 0.725
3gh8 FMNIodotyrosine deiodinase 1 1.21.1.1 0.723
2isl FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.717
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.709
3eof FMNPutative oxidase / 0.702
4ttb FMNIodotyrosine deiodinase 1 / 0.694
3pxv FMNNitroreductase / 0.693
4y9l FADAcyl-CoA dehydrogenase family member 11 / 0.689
4f07 FADStyrene monooxygenase component 2 / 0.684
3e4v FMNUncharacterized protein / 0.683
2z1q FADAcyl-CoA dehydrogenase / 0.682
2d29 FADAcyl-CoA dehydrogenase / 0.681
3u33 FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.677
2ifa FMNUncharacterized protein / 0.673
4eer FMNPhototropin-2 2.7.11.1 0.661
4ybn FADFlavin-nucleotide-binding protein / 0.658
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.657
4hnb FMNLOV protein / 0.657
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.654
4hhd FMNPhototropin-1 2.7.11.1 0.653
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.650