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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2h63 NAP Biliverdin reductase A 1.3.1.24

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2h63 NAPBiliverdin reductase A 1.3.1.24 1.178
1f06 NDPMeso-diaminopimelate D-dehydrogenase 1.4.1.16 0.736
5a06 NDPGlucose-fructose oxidoreductase / 0.729
3o9z NADLipopolysaccaride biosynthesis protein wbpB / 0.709
1h6b NDPGlucose--fructose oxidoreductase 1.1.99.28 0.705
1zh8 NAPUncharacterized protein / 0.703
5a02 NAPGlucose-fructose oxidoreductase / 0.703
3wyc NAPMeso-diaminopimelate D-dehydrogenase 1.4.1.16 0.700
1lc3 NADBiliverdin reductase A 1.3.1.24 0.691
2ixb NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.684
2ixa NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.682
1ryd NDPGlucose--fructose oxidoreductase 1.1.99.28 0.674
3iup NDPPossible NADH oxidoreductase / 0.673
1ofg NDPGlucose--fructose oxidoreductase 1.1.99.28 0.668
1h6a NDPGlucose--fructose oxidoreductase 1.1.99.28 0.666
1yqd NAPSinapyl alcohol dehydrogenase / 0.666
1yqx NAPSinapyl alcohol dehydrogenase / 0.666
4oaq NDPR-specific carbonyl reductase / 0.665
2voj NADAlanine dehydrogenase 1.4.1.1 0.663
3ulk NDPKetol-acid reductoisomerase (NADP(+)) / 0.659
2vhv NAIAlanine dehydrogenase 1.4.1.1 0.655
1i2b NADUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.652
3nbz GTPGTP-binding nuclear protein Ran / 0.650