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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2gj3 FAD Nitrogen fixation regulatory protein 2.7.13.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2gj3 FADNitrogen fixation regulatory protein 2.7.13.3 1.272
1x0p FADTll0078 protein / 0.713
3ewk FADSensory box histidine kinase/response regulator / 0.711
1efp FADElectron transfer flavoprotein subunit alpha / 0.706
4hhd FMNPhototropin-1 2.7.11.1 0.698
3clu FADElectron transfer flavoprotein subunit alpha / 0.697
3clr FADElectron transfer flavoprotein subunit alpha / 0.690
4ybn FADFlavin-nucleotide-binding protein / 0.688
2ign FADPyranose 2-oxidase / 0.680
4eeu FMNPhototropin-2 2.7.11.1 0.677
4mih FADPyranose 2-oxidase 1.1.3.10 0.676
4hmw FMNPyridoxamine 5'-phosphate oxidase / 0.675
2v0u FMNNPH1-1 / 0.673
3cls FADElectron transfer flavoprotein subunit alpha / 0.671
3clt FADElectron transfer flavoprotein subunit alpha / 0.671
4ntd FADThioredoxin reductase / 0.671
1pox FADPyruvate oxidase 1.2.3.3 0.669
3lsm SFDPyranose 2-oxidase / 0.668
4mok FADPyranose 2-oxidase / 0.668
2gmj FADElectron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial 1.5.5.1 0.664
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.664
4jn9 FADDepH / 0.664
4hj4 FMNLOV protein / 0.662
3k4c FADPyranose 2-oxidase / 0.661
3pl8 FADPyranose 2-oxidase / 0.659
5ahk FADAcetolactate synthase II, large subunit / 0.659
1vrq FMNSubunit alpha of sarocosine oxidase / 0.658
1vrq FMNSubunit beta of sarcosine oxidase / 0.658
3aeb FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.658
5dju FMNNPH1-2 / 0.658
5efw FMNNPH1-1 / 0.657
3lsh FADPyranose 2-oxidase / 0.656
5i39 FADL-amino acid deaminase / 0.653
4fwj FADLysine-specific histone demethylase 1B 1 0.652
1ogi FADFerredoxin--NADP reductase 1.18.1.2 0.651
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.651
4hj3 FMNLOV protein / 0.651
5hxw FADL-amino acid deaminase / 0.651