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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2fvd LIA Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2fvd LIACyclin-dependent kinase 2 2.7.11.22 1.122
2wxv WXVCyclin-dependent kinase 2 2.7.11.22 0.761
3rpy 27ZCyclin-dependent kinase 2 2.7.11.22 0.716
3rah O1ZCyclin-dependent kinase 2 2.7.11.22 0.682
1oit HDTCyclin-dependent kinase 2 2.7.11.22 0.679
4eok 4SPCyclin-dependent kinase 2 2.7.11.22 0.676
4acm 7YGCyclin-dependent kinase 2 2.7.11.22 0.664
3qzi X72Cyclin-dependent kinase 2 2.7.11.22 0.660
2bts U32Cyclin-dependent kinase 2 2.7.11.22 0.659
3r9o Z71Cyclin-dependent kinase 2 2.7.11.22 0.657
3qtz X42Cyclin-dependent kinase 2 2.7.11.22 0.655
3rk9 09ZCyclin-dependent kinase 2 2.7.11.22 0.653
3qtq X35Cyclin-dependent kinase 2 2.7.11.22 0.652