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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2fsv NAD NAD(P) transhydrogenase subunit alpha part 1 1.6.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2fsv NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.988
1f8g NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.853
2oor NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.826
1u2g APRNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.811
1u28 NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.809
2oo5 TXDNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.773
1ptj SNDNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.738
1u2d NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.719
1l7e NAINAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.708
1x15 NADNAD(P) transhydrogenase subunit alpha 1.6.1.2 0.698
1x14 NADNAD(P) transhydrogenase subunit alpha 1.6.1.2 0.687
4yr9 NADL-threonine 3-dehydrogenase, mitochondrial 1.1.1.103 0.685
1y8q ATPSUMO-activating enzyme subunit 2 6.3.2 0.682
2yy7 NADL-threonine dehydrogenase / 0.671
2q28 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.669
3h5n ATPMccB protein / 0.665
5jr3 SAHCarminomycin 4-O-methyltransferase DnrK 2.1.1.292 0.665
2yg4 FADPutrescine oxidase / 0.662
3k7m FAD6-hydroxy-L-nicotine oxidase / 0.655
3rha FDAPutrescine oxidase / 0.655
3qvs NADMyo-inositol-1-phosphate synthase (Ino1) / 0.654
3nn6 FB06-hydroxy-L-nicotine oxidase / 0.653
1zmd NAIDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.652
3had NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.651
3qvw NADMyo-inositol-1-phosphate synthase (Ino1) / 0.651
5g3t FDAFlavin-dependent L-tryptophan oxidase VioA / 0.651