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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2fon FAD Acyl-coenzyme A oxidase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2fon FADAcyl-coenzyme A oxidase / 1.341
2vig FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.1 0.785
1t9g FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.784
4y9l FADAcyl-CoA dehydrogenase family member 11 / 0.784
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.781
4x28 FDAAcyl-CoA dehydrogenase FadE26 / 0.779
4x28 FDAAcyl-CoA dehydrogenase FadE27 / 0.779
5jsc FADPutative acyl-CoA dehydrogenase / 0.771
2ix5 FADAcyl-coenzyme A oxidase 4, peroxisomal 1.3.3.6 0.769
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.760
3fcj FADNitroalkane oxidase 1.7.3.1 0.757
3nf4 FADAcyl-CoA dehydrogenase domain-containing protein / 0.752
5ahs FADAcyl-CoA dehydrogenase / 0.750
3djl FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.749
3p4t FAOPutative acyl-CoA dehydrogenase / 0.744
2pg0 FADAcyl-CoA dehydrogenase / 0.742
2zaf FADNitroalkane oxidase 1.7.3.1 0.741
2z1q FADAcyl-CoA dehydrogenase / 0.736
2reh FADNitroalkane oxidase 1.7.3.1 0.734
5af7 FADAcyl-CoA dehydrogenase / 0.733
3mdd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.730
3mpj FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.727
2d29 FADAcyl-CoA dehydrogenase / 0.726
3sf6 FDAGlutaryl-CoA dehydrogenase / 0.724
1egd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.722
3mkh FADNitroalkane oxidase / 0.721
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.720
3owa FADAcyl-CoA dehydrogenase / 0.715
1siq FADGlutaryl-CoA dehydrogenase, mitochondrial 1.3.8.6 0.714
4p13 FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.704
1ege FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.697
1r2j FADFkbI / 0.689
1buc FADAcyl-CoA dehydrogenase, short-chain specific 1.3.8.1 0.686
3pfd FDAAcyl-CoA dehydrogenase FadE25 / 0.678
3oib FDAPutative acyl-CoA dehydrogenase / 0.676
1n4w FADCholesterol oxidase 1.1.3.6 0.674
2eba FADPutative glutaryl-CoA dehydrogenase / 0.671
3r7k FDAProbable acyl CoA dehydrogenase / 0.664
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.664
2dvl FADAcyl-CoA dehydrogenase / 0.662
2a1t FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.652