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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2foi JPA Enoyl-acyl carrier reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2foi JPAEnoyl-acyl carrier reductase / 1.241
3am5 TCLEnoyl-ACP reductase / 0.833
3lt1 FT2Enoyl-ACP reductase / 0.804
2ol4 JPNEnoyl-ACP reductase / 0.764
1zsn TN2Enoyl-ACP reductase / 0.753
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
4e5l DBHPolymerase acidic protein / 0.744
2o2s TCLEnoyl-acyl carrier reductase / 0.740
2x23 TCUEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.729
1nhg TCLEnoyl-ACP reductase / 0.721
1zxl JP1Enoyl-ACP reductase / 0.721
3nrc TCLEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.712
3nj8 NJ8Enoyl-acyl carrier reductase / 0.705
1zw1 TN5Enoyl-ACP reductase / 0.692
3am3 TCLEnoyl-ACP reductase / 0.680
3fnf JPMEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.680
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.676
3fi3 JK2Mitogen-activated protein kinase 10 2.7.11.24 0.672
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4ivw 1GJEstrogen receptor / 0.654
2op1 8PCEnoyl-ACP reductase / 0.653
3fzs B96Protein-tyrosine kinase 2-beta 2.7.10.2 0.652
4igf CHVEnoyl-acyl carrier reductase / 0.651