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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2fmb LP1 Reverse transcriptase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2fmb LP1Reverse transcriptase / 0.957
2p3b 3TLV-1 PROTEASE protein / 0.739
2p3b 3TLV-1 protease / 0.739
1fmb HYBPol polyprotein / 0.736
3kfn 3TLGag-Pol polyprotein / 0.735
2p3d 3TLProtease / 0.730
3kfr 3TLGag-Pol polyprotein / 0.730
4k4p 3TLGag-Pol polyprotein / 0.729
1b11 3TLPol polyprotein / 0.724
3kfp 3TLGag-Pol polyprotein / 0.720
2fxe DR7Gag-Pol polyprotein 3.4.23.16 0.718
3gga GGWGag-Pol polyprotein / 0.709
3el9 DR7Gag-Pol polyprotein 3.4.23.16 0.708
2aoe 0Q4Gag-Pol polyprotein 3.4.23.16 0.707
2az8 3TLGag-Pol polyprotein 3.4.23.16 0.704
2azb 3TLGag-Pol polyprotein 3.4.23.16 0.703
2qi5 MZ7Gag-Pol polyprotein / 0.703
3kf0 3TLGag-Pol polyprotein / 0.700
3em4 DR7Gag-Pol polyprotein 3.4.23.16 0.696
3tog 079Gag-Pol polyprotein 2.7.7.49 0.696
2p3c 3TLProtease / 0.694
3dcr KVSProtease / 0.692
3eky DR7Gag-Pol polyprotein 3.4.23.16 0.692
1daz 0Q4Gag-Pol polyprotein 3.4.23.16 0.691
3ekw DR7Gag-Pol polyprotein 3.4.23.16 0.690
3toh 079Gag-Pol polyprotein 2.7.7.49 0.690
3tof 076Gag-Pol polyprotein 2.7.7.49 0.686
9hvp 0E9Gag-Pol polyprotein / 0.686
1dw6 0Q4Gag-Pol polyprotein 3.4.23.16 0.683
3tlh 3TLGag-Pol polyprotein 3.4.23.16 0.683
2q54 MU1Protease / 0.682
3kfs 3TLGag-Pol polyprotein / 0.679
1z1h HBBGag-Pol polyprotein 3.4.23.16 0.677
1hvj A78Gag-Pol polyprotein / 0.676
3sa9 A68Protease / 0.675
3sa7 55AProtease / 0.673
3hzc 2NCProtease / 0.672
3lit E15Protease / 0.671
3nwx KVSGag-Pol polyprotein 3.4.23.16 0.671
2aqu DR7Gag-Pol polyprotein 3.4.23.16 0.670
2p3a 3TLPol protein / 0.669
2q55 MU0Protease / 0.667
2a1e IPFGag-Pol polyprotein 3.4.23.16 0.665
4fiv LP1POL protein / 0.665
1fff 0Q4Gag-Pol polyprotein 3.4.23.16 0.663
2b60 RITPol polyprotein / 0.662
3bxr DRRGag-Pol polyprotein 3.4.23.16 0.662
1hii C20Gag-Pol polyprotein / 0.661
3sa3 23XProtease / 0.660
1k2b 0Q4Gag-Pol polyprotein 3.4.23.16 0.659
1ffi 2NCGag-Pol polyprotein 3.4.23.16 0.658
3bva 2NCGag-Pol polyprotein 3.4.23.16 0.658
3d1y ROCGag-Pol polyprotein 3.4.23.16 0.657
2az9 3TLGag-Pol polyprotein 3.4.23.16 0.656
1iiq 0ZRGag-Pol polyprotein 3.4.23.16 0.654
3slz 3TLPutative gag-pro-pol polyprotein / 0.654
3d1x ROCGag-Pol polyprotein 3.4.23.16 0.652
3lin E13Protease / 0.652
1hpx KNIGag-Pol polyprotein / 0.650
3bxs DRSGag-Pol polyprotein 3.4.23.16 0.650