sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2eh2 | SAH | Diphthine synthase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 2eh2 | SAH | Diphthine synthase | / | 1.088 | |
| 2dxx | SAH | Diphthine synthase | / | 1.083 | |
| 2e4n | SAH | Diphthine synthase | / | 1.082 | |
| 2ek7 | SAH | Diphthine synthase | / | 1.082 | |
| 2p9d | SAH | Diphthine synthase | / | 1.080 | |
| 2p6l | SAH | Diphthine synthase | / | 1.079 | |
| 2pcm | SAH | Diphthine synthase | / | 1.079 | |
| 2eh4 | SAH | Diphthine synthase | / | 1.078 | |
| 2p6k | SAH | Diphthine synthase | / | 1.078 | |
| 2e8s | SAH | Diphthine synthase | / | 1.077 | |
| 2ed5 | SAH | Diphthine synthase | / | 1.077 | |
| 2ek4 | SAH | Diphthine synthase | / | 1.077 | |
| 2en5 | SAH | Diphthine synthase | / | 1.077 | |
| 2pca | SAH | Diphthine synthase | / | 1.077 | |
| 2e8r | SAH | Diphthine synthase | / | 1.076 | |
| 2ek3 | SAH | Diphthine synthase | / | 1.076 | |
| 2emr | SAH | Diphthine synthase | / | 1.076 | |
| 2pb5 | SAH | Diphthine synthase | / | 1.076 | |
| 2pcg | SAH | Diphthine synthase | / | 1.076 | |
| 2eh5 | SAH | Diphthine synthase | / | 1.075 | |
| 2ek2 | SAH | Diphthine synthase | / | 1.075 | |
| 2eka | SAH | Diphthine synthase | / | 1.075 | |
| 2el3 | SAH | Diphthine synthase | / | 1.075 | |
| 2pci | SAH | Diphthine synthase | / | 1.073 | |
| 2ele | SAH | Diphthine synthase | / | 1.066 | |
| 2dxv | SAH | Diphthine synthase | / | 1.065 | |
| 2ehl | SAH | Diphthine synthase | / | 1.065 | |
| 2eni | SAH | Diphthine synthase | / | 1.065 | |
| 2z6r | SAH | Diphthine synthase | / | 1.065 | |
| 2dxw | SAH | Diphthine synthase | / | 1.064 | |
| 2e07 | SAH | Diphthine synthase | / | 1.064 | |
| 2e7r | SAH | Diphthine synthase | / | 1.064 | |
| 2egb | SAH | Diphthine synthase | / | 1.064 | |
| 2ejj | SAH | Diphthine synthase | / | 1.063 | |
| 2owk | SAH | Diphthine synthase | / | 1.063 | |
| 2dsg | SAH | Diphthine synthase | / | 1.062 | |
| 2dsh | SAH | Diphthine synthase | / | 1.062 | |
| 2e08 | SAH | Diphthine synthase | / | 1.062 | |
| 2e15 | SAH | Diphthine synthase | / | 1.062 | |
| 2egl | SAH | Diphthine synthase | / | 1.062 | |
| 2p5f | SAH | Diphthine synthase | / | 1.062 | |
| 2dek | SAH | Diphthine synthase | / | 1.061 | |
| 2e17 | SAH | Diphthine synthase | / | 1.061 | |
| 2p6i | SAH | Diphthine synthase | / | 1.061 | |
| 2hut | SAH | Diphthine synthase | / | 1.060 | |
| 2pch | SAH | Diphthine synthase | / | 1.060 | |
| 2e16 | SAH | Diphthine synthase | / | 1.059 | |
| 2egs | SAH | Diphthine synthase | / | 1.059 | |
| 2el0 | SAH | Diphthine synthase | / | 1.059 | |
| 2owu | SAH | Diphthine synthase | / | 1.059 | |
| 2dv3 | SAH | Diphthine synthase | / | 1.058 | |
| 2e8h | SAH | Diphthine synthase | / | 1.056 | |
| 2huv | SAH | Diphthine synthase | / | 1.055 | |
| 2eeq | SAH | Diphthine synthase | / | 1.054 | |
| 2owg | SAH | Diphthine synthase | / | 1.051 | |
| 2pck | SAH | Diphthine synthase | / | 1.048 | |
| 2eld | SAH | Diphthine synthase | / | 1.046 | |
| 2pb6 | SAH | Diphthine synthase | / | 1.042 | |
| 1wng | SAH | Diphthine synthase | / | 1.041 | |
| 2ejk | SAH | Diphthine synthase | / | 1.040 | |
| 2dv5 | SAH | Diphthine synthase | / | 1.038 | |
| 2huq | SAH | Diphthine synthase | / | 1.037 | |
| 2p6d | SAH | Diphthine synthase | / | 1.036 | |
| 2dv7 | SAH | Diphthine synthase | / | 1.033 | |
| 2p2x | SAH | Diphthine synthase | / | 1.033 | |
| 2e8q | SAH | Diphthine synthase | / | 1.023 | |
| 2emu | SAH | Diphthine synthase | / | 1.012 | |
| 2dv4 | SAH | Diphthine synthase | / | 1.009 | |
| 2owv | SAH | Diphthine synthase | / | 1.007 | |
| 2pb4 | SAH | Diphthine synthase | / | 1.007 | |
| 2p5c | SAH | Diphthine synthase | / | 1.006 | |
| 2dsi | SAH | Diphthine synthase | / | 0.993 | |
| 1vce | SAH | Diphthine synthase | / | 0.985 | |
| 2hux | SAH | Diphthine synthase | / | 0.927 | |
| 2hr8 | SAH | Diphthine synthase | / | 0.889 | |
| 2ejz | SAH | Diphthine synthase | / | 0.830 | |
| 2ed3 | SAH | Diphthine synthase | / | 0.706 | |
| 2owf | SAH | Diphthine synthase | / | 0.697 | |
| 3ndc | SAH | Precorrin-4 C(11)-methyltransferase | 2.1.1.133 | 0.697 | |
| 1cbf | SAH | Cobalt-precorrin-4 C(11)-methyltransferase | 2.1.1.271 | 0.690 | |
| 5a7y | SAH | tRNA (adenine(9)-N1)-methyltransferase | 2.1.1.218 | 0.680 | |
| 2egw | SAH | Ribosomal RNA small subunit methyltransferase E | 2.1.1.193 | 0.677 | |
| 2hma | SAM | tRNA-specific 2-thiouridylase MnmA | / | 0.676 | |
| 2qbu | SAH | Precorrin-2 methyltransferase | / | 0.676 | |
| 3s3t | ATP | Universal stress protein | / | 0.675 | |
| 2ybo | SAH | Methyltransferase | / | 0.674 | |
| 2zvb | SAH | Precorrin-3 C17-methyltransferase | / | 0.665 | |
| 2zvc | SAH | Precorrin-3 C17-methyltransferase | / | 0.664 | |
| 4fak | SAM | Ribosomal RNA large subunit methyltransferase H | / | 0.661 | |
| 3hpr | AP5 | Adenylate kinase | / | 0.658 | |
| 4cnf | MTA | SpoU rRNA methylase | / | 0.656 | |
| 4rr8 | A3S | Probable threonine--tRNA ligase 2 | 6.1.1.3 | 0.654 | |
| 2ioa | ADP | Bifunctional glutathionylspermidine synthetase/amidase | / | 0.652 | |
| 3nk7 | SAM | 23S rRNA (adenosine(1067)-2'-O)-methyltransferase | / | 0.652 | |
| 1i44 | ACP | Insulin receptor | 2.7.10.1 | 0.651 | |
| 2e0n | SAH | Precorrin-2 C20-methyltransferase | / | 0.650 | |
| 4azw | ATP | O-antigen chain terminator bifunctional methyltransferase/kinase WbdD | / | 0.650 |