Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2e2q ADP ATP-dependent hexokinase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2e2q ADPATP-dependent hexokinase / 1.063
1t44 ATPActin, alpha skeletal muscle / 0.786
4pkh ADPActin, alpha skeletal muscle / 0.777
1kxp ATPActin, alpha skeletal muscle / 0.769
4pki ATPActin, alpha skeletal muscle / 0.755
1qz5 ATPActin, alpha skeletal muscle / 0.753
4ehu ANP2-hydroxyisocaproyl-CoA dehydratase activator / 0.745
5ce3 ATPActin / 0.745
2q36 ATPActin, alpha skeletal muscle / 0.743
4b9q ATPChaperone protein DnaK / 0.737
1s22 ATPActin, alpha skeletal muscle / 0.736
4k41 ATPActin, alpha skeletal muscle / 0.736
4pkg ATPActin, alpha skeletal muscle / 0.736
1c0f ATPMajor actin / 0.733
1dej ATPMajor actin / 0.730
4a62 ANPPlasmid segregation protein ParM / 0.726
1eqy ATPActin, alpha skeletal muscle / 0.723
1mdu ATPActin, alpha skeletal muscle / 0.723
3mn9 ATPActin-5C / 0.722
4eht ADP2-hydroxyisocaproyl-CoA dehydratase activator / 0.721
2q97 ATPActin, alpha skeletal muscle / 0.720
3m6g ATPActin, alpha skeletal muscle / 0.719
4jhd ANPActin-5C / 0.717
3m1f ATPActin, alpha skeletal muscle / 0.716
3chw ATPMajor actin / 0.715
3eku ATPActin-5C / 0.714
4m63 ATPActin-5C / 0.711
1atn ATPActin, alpha skeletal muscle / 0.708
1rgi ATPActin, alpha skeletal muscle / 0.708
3eks ATPActin-5C / 0.706
1e4g ATPCell division protein FtsA / 0.704
2zgy GDPPlasmid segregation protein ParM / 0.700
3mn6 ATPActin-5C / 0.700
1wua ATPActin, alpha skeletal muscle / 0.697
3ffk ATPActin, alpha skeletal muscle / 0.693
4cbx ATPActin-2 / 0.683
4k42 ADPActin, alpha skeletal muscle / 0.681
2d0o ADPDiol dehydratase-reactivating factor alpha subunit / 0.679
2e2p ADPATP-dependent hexokinase / 0.677
1glf ADPGlycerol kinase / 0.671
4a61 ANPPlasmid segregation protein ParM / 0.668
3wqt ANPCell division protein FtsA / 0.666
2fsn ADPArchaeal actin homolog / 0.664
1lot ATPActin, alpha skeletal muscle / 0.660
4a2b AGSCell division protein FtsA / 0.658
4brd ANPEctonucleoside triphosphate diphosphohydrolase I / 0.654
3cx6 GDPGuanine nucleotide-binding protein subunit alpha-13 / 0.653
4bgb ADPPredicted molecular chaperone distantly related to HSP70-fold metalloproteases / 0.651