2.000 Å
X-ray
2006-11-15
Name: | ATP-dependent hexokinase |
---|---|
ID: | Q96Y14_SULTO |
AC: | Q96Y14 |
Organism: | Sulfolobus tokodaii |
Reign: | Archaea |
TaxID: | 273063 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 18.783 |
---|---|
Number of residues: | 33 |
Including | |
Standard Amino Acids: | 31 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.013 | 273.375 |
% Hydrophobic | % Polar |
---|---|
56.79 | 43.21 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 53.04 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
6.88807 | -9.71263 | 24.7671 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1B | N | THR- 116 | 2.84 | 163.46 | H-Bond (Protein Donor) |
O3B | OG1 | THR- 116 | 2.74 | 166.1 | H-Bond (Protein Donor) |
C1' | CB | ALA- 144 | 3.91 | 0 | Hydrophobic |
O2' | O | ALA- 199 | 2.81 | 125.74 | H-Bond (Ligand Donor) |
C1' | CB | ALA- 202 | 4.45 | 0 | Hydrophobic |
O2' | NZ | LYS- 203 | 3.37 | 161.42 | H-Bond (Protein Donor) |
C2' | CD | LYS- 203 | 4.07 | 0 | Hydrophobic |
N6 | OD2 | ASP- 206 | 3.19 | 149.73 | H-Bond (Ligand Donor) |
O1A | N | GLY- 248 | 2.94 | 152.58 | H-Bond (Protein Donor) |
O2A | CZ | ARG- 251 | 4 | 0 | Ionic (Protein Cationic) |