2.000 Å
X-ray
2006-11-15
| Name: | ATP-dependent hexokinase |
|---|---|
| ID: | Q96Y14_SULTO |
| AC: | Q96Y14 |
| Organism: | Sulfolobus tokodaii |
| Reign: | Archaea |
| TaxID: | 273063 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 18.783 |
|---|---|
| Number of residues: | 33 |
| Including | |
| Standard Amino Acids: | 31 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.013 | 273.375 |
| % Hydrophobic | % Polar |
|---|---|
| 56.79 | 43.21 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 53.04 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| 6.88807 | -9.71263 | 24.7671 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O1B | N | THR- 116 | 2.84 | 163.46 | H-Bond (Protein Donor) |
| O3B | OG1 | THR- 116 | 2.74 | 166.1 | H-Bond (Protein Donor) |
| C1' | CB | ALA- 144 | 3.91 | 0 | Hydrophobic |
| O2' | O | ALA- 199 | 2.81 | 125.74 | H-Bond (Ligand Donor) |
| C1' | CB | ALA- 202 | 4.45 | 0 | Hydrophobic |
| O2' | NZ | LYS- 203 | 3.37 | 161.42 | H-Bond (Protein Donor) |
| C2' | CD | LYS- 203 | 4.07 | 0 | Hydrophobic |
| N6 | OD2 | ASP- 206 | 3.19 | 149.73 | H-Bond (Ligand Donor) |
| O1A | N | GLY- 248 | 2.94 | 152.58 | H-Bond (Protein Donor) |
| O2A | CZ | ARG- 251 | 4 | 0 | Ionic (Protein Cationic) |