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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2dr8 CTP CCA-adding enzyme 2.7.7.72

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2dr8 CTPCCA-adding enzyme 2.7.7.72 1.005
3ovb ATPCCA-adding enzyme 2.7.7.72 0.709
3ovs CTPCCA-adding enzyme 2.7.7.72 0.704
2nom DUTPoly(A) polymerase, putative / 0.680
1r8c UTPCCA-adding enzyme 2.7.7.72 0.676
2zh6 ATPCCA-adding enzyme 2.7.7.72 0.666
2dra ATPCCA-adding enzyme 2.7.7.72 0.665
1r8b ATPCCA-adding enzyme 2.7.7.72 0.664
2vfz UPFN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.657
3ova APCCCA-adding enzyme 2.7.7.72 0.653
3ov7 ATPCCA-adding enzyme 2.7.7.72 0.652