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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2dji FAD Pyruvate oxidase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2dji FADPyruvate oxidase / 1.496
1v5e FADPyruvate oxidase / 1.404
1pox FADPyruvate oxidase 1.2.3.3 1.157
1pow FADPyruvate oxidase 1.2.3.3 0.899
5ahk FADAcetolactate synthase II, large subunit / 0.794
4d5g FADCyclohexane-1,2-dione hydrolase 3.7.1.11 0.744
3ea4 FABAcetolactate synthase, chloroplastic 2.2.1.6 0.723
2bf4 FADNADPH--cytochrome P450 reductase / 0.712
2bn4 FADNADPH--cytochrome P450 reductase / 0.712
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.704
2vnh FADNADPH:ferredoxin reductase / 0.700
2ji7 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.698
1y9d FADPyruvate oxidase 1.2.3.3 0.697
2pan FADGlyoxylate carboligase 4.1.1.47 0.697
2qdx FADFerredoxin--NADP+ reductase / 0.697
2a1u FADElectron transfer flavoprotein subunit alpha, mitochondrial / 0.695
3e9y FABAcetolactate synthase, chloroplastic 2.2.1.6 0.694
1ogj FADFerredoxin--NADP reductase 1.18.1.2 0.692
1usc FMNMonooxygenase / 0.691
4iv8 SAMPhosphoethanolamine N-methyltransferase,putative / 0.691
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 0.687
3r5z F42Uncharacterized protein / 0.687
3zbt FADFerredoxin--NADP reductase 1.18.1.2 0.686
1tdo FADL-amino-acid oxidase 1.4.3.2 0.683
4rhe FMNFlavin prenyltransferase UbiX / 0.682
1efp FADElectron transfer flavoprotein subunit alpha / 0.681
3p7n FMNLight-activated DNA-binding protein EL222 / 0.681
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.679
3a20 FMNFMN-binding protein / 0.678
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.677
1a8p FADFerredoxin--NADP reductase / 0.676
3vy2 FMNFMN-binding protein / 0.676
4bvh AR6NAD-dependent protein deacetylase sirtuin-3, mitochondrial 3.5.1 0.676
1wlk FMNFMN-binding protein / 0.674
5d7q AR6NAD-dependent protein deacetylase sirtuin-2 3.5.1 0.674
2ptf FMNUncharacterized protein MTH_863 / 0.673
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.673
3zxs DLZDeoxyribodipyrimidine photolyase-related protein / 0.671
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.670
3lsh FADPyranose 2-oxidase / 0.670
3lsi FADPyranose 2-oxidase / 0.670
1jsc FADAcetolactate synthase catalytic subunit, mitochondrial 2.2.1.6 0.669
2ji6 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.669
3lsm SFDPyranose 2-oxidase / 0.669
4bvb AR6NAD-dependent protein deacetylase sirtuin-3, mitochondrial 3.5.1 0.669
3r5y F42Uncharacterized protein / 0.667
1j9z FADNADPH--cytochrome P450 reductase / 0.666
1flm FMNFMN-binding protein / 0.665
3crz FADFerredoxin--NADP+ reductase / 0.665
3mzi FMNActivator of photopigment and puc expression / 0.665
3all FAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase / 0.664
2bgi FADNADPH:ferredoxin reductase / 0.663
2yxl SFG450aa long hypothetical fmu protein / 0.663
4hmx FMNPyridoxamine 5'-phosphate oxidase / 0.663
4l7v SAHProtein-L-isoaspartate O-methyltransferase / 0.663
2dpm SAMModification methylase DpnIIA 2.1.1.72 0.662
5jdz SAHMethyl transferase / 0.662
3a6r FMNFMN-binding protein / 0.661
4qnv GEKtRNA U34 carboxymethyltransferase / 0.661
1m2h APRNAD-dependent protein deacylase 1 / 0.658
3pl8 FADPyranose 2-oxidase / 0.657
2eq7 NADDihydrolipoyl dehydrogenase / 0.655
1ps9 FAD2,4-dienoyl-CoA reductase 1.3.1.34 0.654
3qfr FADNADPH--cytochrome P450 reductase / 0.653
3kpf FADPolyamine oxidase 1.5.3.14 0.652
4eer FMNPhototropin-2 2.7.11.1 0.652
4yac NAIC alpha-dehydrogenase / 0.652
2e83 FMNFMN-binding protein / 0.650
3m12 FADMonomeric sarcosine oxidase 1.5.3.1 0.650