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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2d7d ADP UvrABC system protein B

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2d7d ADPUvrABC system protein B / 1.130
2nmv ADPUvrABC system protein B / 0.848
4o3m ADPBloom syndrome protein 3.6.4.12 0.695
1oyy AGSATP-dependent DNA helicase RecQ 3.6.4.12 0.693
3cx6 GDPGuanine nucleotide-binding protein subunit alpha-13 / 0.687
2c9o ADPRuvB-like 1 3.6.4.12 0.679
3qe2 NAPNADPH--cytochrome P450 reductase / 0.677
3qfr NAPNADPH--cytochrome P450 reductase / 0.676
1fp6 ADPNitrogenase iron protein 1 1.18.6.1 0.672
1a2b GSPTransforming protein RhoA / 0.671
1suw NAPNAD kinase / 0.668
3sqx ANPATP-dependent RNA helicase MSS116, mitochondrial 3.6.4.13 0.667
4dso GSPGTPase KRas / 0.666
1ja1 NAPNADPH--cytochrome P450 reductase / 0.664
1f20 NAPNitric oxide synthase, brain 1.14.13.39 0.662
1l8q ADPChromosomal replication initiator protein DnaA / 0.660
3mjh GTPRas-related protein Rab-5A / 0.660
1w5s ADPORC1-type DNA replication protein 2 / 0.659
2xsz ATPRuvB-like 2 3.6.4.12 0.659
4q7f 3D1Uncharacterized protein / 0.659
2dsc APRADP-sugar pyrophosphatase 3.6.1.13 0.657
2fju GSPRas-related C3 botulinum toxin substrate 1 / 0.656
3fws ANPTranscriptional repressor CcpN / 0.656
3qfc NAPNADPH--cytochrome P450 reductase / 0.656
2c96 ATPPsp operon transcriptional activator / 0.655
4y7c NAPNADPH--cytochrome P450 reductase / 0.655
1e96 GTPRas-related C3 botulinum toxin substrate 1 / 0.654
3b1x GNPFerrous iron transport protein B / 0.654
3qfs NAPNADPH--cytochrome P450 reductase / 0.654
3qft NAPNADPH--cytochrome P450 reductase / 0.654
4xjx ATPType I restriction enzyme EcoR124II R protein 3.1.21.3 0.654
4y9u NAPNADPH--cytochrome P450 reductase / 0.653
3sop GDPNeuronal-specific septin-3 / 0.651
3zc3 NAPFerredoxin--NADP reductase 1.18.1.2 0.651
1ja0 NAPNADPH--cytochrome P450 reductase / 0.650