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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2d32 ANP Glutamate--cysteine ligase 6.3.2.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2d32 ANPGlutamate--cysteine ligase 6.3.2.2 1.080
3h0l ADPAspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B 6.3.5 0.747
3lfz ADPUncharacterized protein MJ1225 / 0.704
2qc8 ADPGlutamine synthetase 6.3.1.2 0.686
3c3y SAHO-methyltransferase / 0.657
3ufg ATPGlycine--tRNA ligase alpha subunit / 0.656
4eak ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.656
3fws ANPTranscriptional repressor CcpN / 0.655
5je2 SAHMethyl transferase / 0.654
5ccb SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.652
2wgh DTPRibonucleoside-diphosphate reductase large subunit 1.17.4.1 0.651