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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2d06 EST Sulfotransferase 1A1 2.8.2.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2d06 ESTSulfotransferase 1A1 2.8.2.1 1.016
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.744
2j7y E3OEstrogen receptor beta / 0.727
4j24 ESTEstrogen receptor beta / 0.687
4ofr DHTAndrogen receptor / 0.685
3uzz ASD3-oxo-5-beta-steroid 4-dehydrogenase / 0.684
3gki CLRNiemann-Pick C1 protein / 0.677
3l03 4OHEstrogen receptor / 0.677
3ols ESTEstrogen receptor beta / 0.675
2aib ERGBeta-elicitin cinnamomin / 0.670
4j26 ESTEstrogen receptor beta / 0.665
3bej MUFBile acid receptor / 0.664
2j7x ESTEstrogen receptor beta / 0.663
3q95 ESLEstrogen receptor / 0.663
3oll ESTEstrogen receptor beta / 0.662
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3iw1 ASDSteroid C26-monooxygenase 1.14.13.141 0.657
4p6x HCYGlucocorticoid receptor / 0.656
1t79 DHTAndrogen receptor / 0.655
3vhu SNLMineralocorticoid receptor / 0.653