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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ccu 2D9 Heat shock protein HSP 90-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ccu 2D9Heat shock protein HSP 90-alpha / 0.999
2byi 2DDHeat shock protein HSP 90-alpha / 0.762
2vcj 2EQHeat shock protein HSP 90-alpha / 0.761
1yc4 43PHeat shock protein HSP 90-alpha / 0.759
3k97 4CDHeat shock protein HSP 90-alpha / 0.747
1drt PCVClavaminate synthase 1 1.14.11.21 0.744
3eko PYUHeat shock protein HSP 90-alpha / 0.735
2xab VHDHeat shock protein HSP 90-alpha / 0.734
2cct 2E1Heat shock protein HSP 90-alpha / 0.733
3hek BD0Heat shock protein HSP 90-alpha / 0.732
4egk RDCHeat shock protein HSP 90-alpha / 0.732
2yi7 BZ8Heat shock protein HSP 90-alpha / 0.727
1yc1 4BCHeat shock protein HSP 90-alpha / 0.725
4bqj XKLHeat shock protein HSP 90-alpha / 0.724
2ye4 2FYHeat shock protein HSP 90-alpha / 0.718
4b7p 9UNHeat shock protein HSP 90-alpha / 0.718
2xjj L81Heat shock protein HSP 90-alpha / 0.715
3k98 1RCHeat shock protein HSP 90-alpha / 0.713
2ye9 2D4Heat shock protein HSP 90-alpha / 0.711
2yi5 YI5Heat shock protein HSP 90-alpha / 0.709
2xjx XJXHeat shock protein HSP 90-alpha / 0.703
3k99 PFTHeat shock protein HSP 90-alpha / 0.699
2bre KJ2ATP-dependent molecular chaperone HSP82 / 0.691
2cgf P2NATP-dependent molecular chaperone HSP82 / 0.688
3ekr PY9Heat shock protein HSP 90-alpha / 0.682
2yjw YJWHeat shock protein HSP 90-alpha / 0.672
2fyp RDEEndoplasmin / 0.669
1bgq RDCATP-dependent molecular chaperone HSP82 / 0.660
2xjg XJGHeat shock protein HSP 90-alpha / 0.658
2yec XQ0Heat shock protein HSP 90-alpha / 0.657
3hhu 819Heat shock protein HSP 90-alpha / 0.654
2bsm BSMHeat shock protein HSP 90-alpha / 0.652
4mp7 PFT[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial 2.7.11.2 0.652
2bz5 AB4Heat shock protein HSP 90-alpha / 0.650
2yi6 6QMHeat shock protein HSP 90-alpha / 0.650
2yk2 YJWHeat shock protein HSP 90-alpha / 0.650