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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2c6k DT2 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2c6k DT2Cyclin-dependent kinase 2 2.7.11.22 0.904
2c6m DT5Cyclin-dependent kinase 2 2.7.11.22 0.772
2c6l DT4Cyclin-dependent kinase 2 2.7.11.22 0.754
2c6i DT1Cyclin-dependent kinase 2 2.7.11.22 0.748
1y8y CT7Cyclin-dependent kinase 2 2.7.11.22 0.734
2vtl LZ5Cyclin-dependent kinase 2 2.7.11.22 0.710
4ez3 0S0Cyclin-dependent kinase 2 2.7.11.22 0.697
1oit HDTCyclin-dependent kinase 2 2.7.11.22 0.673
3rpy 27ZCyclin-dependent kinase 2 2.7.11.22 0.673
3r9o Z71Cyclin-dependent kinase 2 2.7.11.22 0.670
2c6t DT5Cyclin-dependent kinase 2 2.7.11.22 0.662
2wxv WXVCyclin-dependent kinase 2 2.7.11.22 0.662
4fx3 60KCyclin-dependent kinase 2 2.7.11.22 0.655
2vts LZCCyclin-dependent kinase 2 2.7.11.22 0.654
3r9h Z67Cyclin-dependent kinase 2 2.7.11.22 0.654
4acm 7YGCyclin-dependent kinase 2 2.7.11.22 0.653
1y91 CT9Cyclin-dependent kinase 2 2.7.11.22 0.651