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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2c5e GDD GDP-mannose 3,5-epimerase 5.1.3.18

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2c5e GDDGDP-mannose 3,5-epimerase 5.1.3.18 1.480
1z7e UGABifunctional polymyxin resistance protein ArnA / 0.734
1ek6 UPGUDP-glucose 4-epimerase / 0.726
4lis UPGUDP-glucose 4-epimerase (Eurofung) / 0.717
1t2a GDPGDP-mannose 4,6 dehydratase 4.2.1.47 0.711
1sb8 UD2WbpP / 0.705
2q3e NAIUDP-glucose 6-dehydrogenase 1.1.1.22 0.704
1i3k UPGUDP-glucose 4-epimerase / 0.699
4zrn UPGUDP-glucose 4-epimerase, putative / 0.699
3ruh UD6UDP-N-acetylglucosamine 4-epimerase / 0.682
3tdk UPGUDP-glucose 6-dehydrogenase 1.1.1.22 0.678
1cul GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.677
1kvs UPGUDP-glucose 4-epimerase 5.1.3.2 0.674
3enk UPGUDP-glucose 4-epimerase / 0.667
2j9l ATPH(+)/Cl(-) exchange transporter 5 / 0.665
3ruc UD2UDP-N-acetylglucosamine 4-epimerase / 0.665
3q2k NAIProbable oxidoreductase / 0.662
3wfj NAD2-dehydropantoate 2-reductase / 0.661
1zcb GDPGuanine nucleotide-binding protein subunit alpha-13 / 0.660
2pk3 GDDGDP-6-deoxy-D-mannose reductase / 0.660
1xel UPGUDP-glucose 4-epimerase 5.1.3.2 0.659
2yy7 NADL-threonine dehydrogenase / 0.659
1azt GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.658
4o9k CMKArabinose 5-phosphate isomerase / 0.656
4dlz GNPGTPase HRas / 0.654
3nn6 FB06-hydroxy-L-nicotine oxidase / 0.653
3h3j NADL-lactate dehydrogenase 1 1.1.1.27 0.651
1udc UFMUDP-glucose 4-epimerase 5.1.3.2 0.650
2bja NAD1-pyrroline-5-carboxylate dehydrogenase / 0.650