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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bro DF2 Serine/threonine-protein kinase Chk1 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2bro DF2Serine/threonine-protein kinase Chk1 2.7.11.1 0.989
2brm DFZSerine/threonine-protein kinase Chk1 2.7.11.1 0.815
2brb PFQSerine/threonine-protein kinase Chk1 2.7.11.1 0.783
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2br1 PFPSerine/threonine-protein kinase Chk1 2.7.11.1 0.692
2brn DF1Serine/threonine-protein kinase Chk1 2.7.11.1 0.689
4jq7 KJQEpidermal growth factor receptor 2.7.10.1 0.676
2brg DFYSerine/threonine-protein kinase Chk1 2.7.11.1 0.675
2bfy H1NAurora kinase B-A 2.7.11.1 0.671
4jq8 KJ8Epidermal growth factor receptor 2.7.10.1 0.656
3w16 P9JAurora kinase A 2.7.11.1 0.655