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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bre KJ2 ATP-dependent molecular chaperone HSP82

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2bre KJ2ATP-dependent molecular chaperone HSP82 / 0.913
2brc CT5ATP-dependent molecular chaperone HSP82 / 0.802
2iwx M1SATP-dependent molecular chaperone HSP82 / 0.774
2fxs RDAATP-dependent molecular chaperone HSP82 / 0.769
2fyp RDEEndoplasmin / 0.755
2cgf P2NATP-dependent molecular chaperone HSP82 / 0.751
2iwu NP5ATP-dependent molecular chaperone HSP82 / 0.744
2xd6 XD6ATP-dependent molecular chaperone HSP82 / 0.739
2yk2 YJWHeat shock protein HSP 90-alpha / 0.739
1qy8 RDIEndoplasmin / 0.721
3k97 4CDHeat shock protein HSP 90-alpha / 0.718
2byi 2DDHeat shock protein HSP 90-alpha / 0.716
2iws NP4ATP-dependent molecular chaperone HSP82 / 0.714
2wer RDCATP-dependent molecular chaperone HSP82 / 0.707
2vcj 2EQHeat shock protein HSP 90-alpha / 0.703
2xx2 13CATP-dependent molecular chaperone HSP82 / 0.701
4egk RDCHeat shock protein HSP 90-alpha / 0.700
3hhu 819Heat shock protein HSP 90-alpha / 0.696
2ccu 2D9Heat shock protein HSP 90-alpha / 0.691
1bgq RDCATP-dependent molecular chaperone HSP82 / 0.689
2cct 2E1Heat shock protein HSP 90-alpha / 0.688
3eko PYUHeat shock protein HSP 90-alpha / 0.684
2uwd 2GGHeat shock protein HSP 90-alpha / 0.683
4ce1 7FKATP-dependent molecular chaperone HSP82 / 0.676
2yi6 6QMHeat shock protein HSP 90-alpha / 0.674
1u0z RDCEndoplasmin / 0.668
2yei XQIHeat shock protein HSP 90-alpha / 0.666
4bqj XKLHeat shock protein HSP 90-alpha / 0.665
2vci 2GJHeat shock protein HSP 90-alpha / 0.664
3ekr PY9Heat shock protein HSP 90-alpha / 0.663
1yc4 43PHeat shock protein HSP 90-alpha / 0.658
2bz5 AB4Heat shock protein HSP 90-alpha / 0.658
2xab VHDHeat shock protein HSP 90-alpha / 0.656
2yec XQ0Heat shock protein HSP 90-alpha / 0.656
2yi5 YI5Heat shock protein HSP 90-alpha / 0.652
4g3f 0WBMitogen-activated protein kinase kinase kinase 14 2.7.11.25 0.650