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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bn4 FMN NADPH--cytochrome P450 reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2bn4 FMNNADPH--cytochrome P450 reductase / 1.187
2bf4 FMNNADPH--cytochrome P450 reductase / 1.024
3ojw FMNNADPH--cytochrome P450 reductase / 0.935
3ojx FMNNADPH--cytochrome P450 reductase / 0.909
3qe2 FMNNADPH--cytochrome P450 reductase / 0.888
3qfr FMNNADPH--cytochrome P450 reductase / 0.858
4oxx FMNCindoxin / 0.845
2fcr FMNFlavodoxin / 0.824
1amo FMNNADPH--cytochrome P450 reductase / 0.822
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.814
4y7c FMNNADPH--cytochrome P450 reductase / 0.811
4yao FMNNADPH--cytochrome P450 reductase / 0.799
1fue FMNFlavodoxin / 0.797
3n3b FMNProtein NrdI / 0.781
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.779
1yob FMNFlavodoxin 2 / 0.770
3f6s FMNFlavodoxin / 0.769
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.769
1azl FMNFlavodoxin / 0.766
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.765
1akw FMNFlavodoxin / 0.763
1akr FMNFlavodoxin / 0.762
1xyv FMNFlavodoxin / 0.760
1ofv FMNFlavodoxin / 0.757
3n3a FMNProtein NrdI / 0.755
1j8q FMNFlavodoxin / 0.754
1wsb FMNFlavodoxin / 0.754
3n39 FMNProtein NrdI / 0.754
1c7f FMNFlavodoxin / 0.750
2fx2 FMNFlavodoxin / 0.747
2v5u FMNFlavodoxin / 0.746
4bmp FMNProtein NrdI / 0.745
1czn FMNFlavodoxin / 0.737
2w5u FMNFlavodoxin / 0.734
1ja0 FMNNADPH--cytochrome P450 reductase / 0.732
4bmo FMNProtein NrdI / 0.721
1aku FMNFlavodoxin / 0.720
1ahn FMNFlavodoxin 1 / 0.712
4n65 FMNFMN-dependent NADH-azoreductase 1 / 0.712
3esz FMNFlavodoxin / 0.711
2ohh FMNType A flavoprotein FprA 1 0.703
3f6r FMNFlavodoxin / 0.703
1ja1 FMNNADPH--cytochrome P450 reductase / 0.696
1j9g FMNFlavodoxin / 0.695
3klb FMNUncharacterized protein / 0.692
5tgz FMNCannabinoid receptor 1 / 0.690
1bu5 RBFFlavodoxin / 0.689
1xyy FMNFlavodoxin / 0.689
4fx2 FMNFlavodoxin / 0.688
1j9z FMNNADPH--cytochrome P450 reductase / 0.687
2z9d FMNFMN-dependent NADH-azoreductase / 0.687
4j8p FMNFlavodoxin / 0.687
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.682
2b3d FADModulator of drug activity B / 0.680
5xra FMNCannabinoid receptor 1 / 0.675
1ycg FMNNitric oxide reductase 1 0.671
1ycf FMNNitric oxide reductase 1 0.667
4xq6 FMNDihydroorotate dehydrogenase (quinone) / 0.665
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.664
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 0.664
2ohi FMNType A flavoprotein FprA 1 0.663
1ykg FMNSulfite reductase [NADPH] flavoprotein alpha-component / 0.658
1ep1 FMNDihydroorotate dehydrogenase B (NAD(+)), catalytic subunit 1.3.1.14 0.657
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.656
5xr8 FMNCannabinoid receptor 1 / 0.656
1t5b FMNFMN-dependent NADH-azoreductase / 0.655
1ych FMNNitric oxide reductase 1 0.655
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.654
2isl FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.654
2q9u FMNA-type flavoprotein / 0.654
3rpe FADPutative modulator of drug activity / 0.653