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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bei ACO Diamine acetyltransferase 2 2.3.1.57

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2bei ACODiamine acetyltransferase 2 2.3.1.57 1.326
2vez ACOGlucosamine 6-phosphate acetyltransferase, putative / 0.942
2q4v ACODiamine acetyltransferase 2 2.3.1.57 0.904
2cy2 ACOProbable acetyltransferase / 0.876
1i12 ACOGlucosamine 6-phosphate N-acetyltransferase / 0.875
1b87 ACOAac(6')-Ii protein / 0.872
2fxf ACODiamine acetyltransferase 1 / 0.860
2a4n COAAac(6')-Ii protein / 0.859
4u9v ACON-alpha-acetyltransferase 40 2.3.1 0.852
1cjw COTSerotonin N-acetyltransferase / 0.836
1tiq COASpermidine/spermine N(1)-acetyltransferase / 0.832
3dr8 ACOL-methionine sulfoximine/L-methionine sulfone acetyltransferase / 0.822
4ava ACOAcetyltransferase Pat 2.3.1 0.818
3f0a ACOSpermidine N(1)-acetyltransferase / 0.815
2b3v ACODiamine acetyltransferase 1 / 0.813
4jwp ACOGCN5-related N-acetyltransferase / 0.803
5kf9 ACOPredicted acetyltransferase / 0.802
1n71 COAAac(6')-Ii protein / 0.801
1qsm ACOHistone acetyltransferase HPA2 / 0.796
5kgp ACOPredicted acetyltransferase / 0.796
2cns ACORibosomal-protein-alanine acetyltransferase / 0.788
2giv ACOHistone acetyltransferase KAT8 / 0.788
5kf8 COAPredicted acetyltransferase / 0.788
3exn ACOProbable acetyltransferase / 0.786
3k9u ACOSpermidine N(1)-acetyltransferase / 0.779
3pgp ACOUncharacterized protein / 0.779
5kf2 ACOPredicted acetyltransferase / 0.776
1l0c COTSerotonin N-acetyltransferase / 0.775
5kgh ACOPredicted acetyltransferase / 0.774
1ib1 COTSerotonin N-acetyltransferase / 0.773
1kux CA3Serotonin N-acetyltransferase / 0.773
3f8k COAUncharacterized protein / 0.771
1bob ACOHistone acetyltransferase type B catalytic subunit / 0.770
3zj0 ACOPutative acetyltransferase OgpAT / 0.769
2cnt COARibosomal-protein-alanine acetyltransferase / 0.768
5kf8 ACOPredicted acetyltransferase / 0.768
3gya COAGCN5-related N-acetyltransferase / 0.767
5kf9 COAPredicted acetyltransferase / 0.764
5kgj ACOPredicted acetyltransferase / 0.761
2bue COAAAC(6')-Ib / 0.758
1kuv CA5Serotonin N-acetyltransferase / 0.757
2r8v ACOAmino-acid acetyltransferase / 0.755
1kuy COTSerotonin N-acetyltransferase / 0.753
2y0m ACOHistone acetyltransferase KAT8 / 0.752
1ozp ACOMycothiol acetyltransferase 2.3.1.189 0.748
3gy9 COAGCN5-related N-acetyltransferase / 0.746
2bsw CAOProbable acetyltransferase / 0.745
2jdc CAOProbable acetyltransferase / 0.743
2x7b COAN-alpha-acetyltransferase 2.3.1 0.742
4zm6 ACON-acetyl-beta-D glucosaminidase / 0.741
2jdd ACOProbable acetyltransferase / 0.739
4r3k COAN-alpha-acetyltransferase 2.3.1 0.738
1wwz ACOUncharacterized protein / 0.737
4ag7 COAGlucosamine 6-phosphate N-acetyltransferase / 0.737
5kf1 ACOPredicted acetyltransferase / 0.737
2rc4 ACOHistone acetyltransferase KAT6A / 0.731
1s5k COAAminoglycoside N(6')-acetyltransferase type 1 / 0.729
4mxe ACON-acetyltransferase ESCO1 2.3.1 0.726
5kf1 COAPredicted acetyltransferase / 0.725
5h84 1VUHistone acetyltransferase KAT2A 2.3.1.48 0.724
3te4 ACODopamine N-acetyltransferase / 0.723
2ge3 ACOProbable acetyltransferase / 0.722
4lx9 ACON-alpha-acetyltransferase 2.3.1 0.721
4kvx ACON-terminal acetyltransferase A complex catalytic subunit ard1 2.3.1.88 0.720
1ghe ACOAcetyltransferase 2.3.1 0.719
2prb COAAminoglycoside 6-N-acetyltransferase type Ib11 / 0.713
4r87 COASpermidine N(1)-acetyltransferase / 0.713
4jxr ACOAcetyltransferase / 0.712
3r1k COAN-acetyltransferase Eis / 0.711
1j4j ACOAcetyltransferase 2.3.1 0.708
2c27 ACOMycothiol acetyltransferase 2.3.1.189 0.708
2qir COAAminoglycoside 6-N-acetyltransferase type Ib11 / 0.706
1p0h ACOMycothiol acetyltransferase 2.3.1.189 0.704
1qsr ACOHAT A1 / 0.701
4qvt ACOAcetyltransferase YpeA 2.3.1 0.698
1v0c ACOAAC(6')-Ib / 0.694
4ua3 COAN-alpha-acetyltransferase 40 2.3.1 0.692
1pu9 COAHAT A1 / 0.690
2vqy ACOAAC(6')-Ib / 0.688
4h6z ACOAlpha-tubulin N-acetyltransferase 1 / 0.685
2jev NHQDiamine acetyltransferase 1 / 0.683
1s7n COAAcetyl transferase / 0.678
2wpw ACOOrf14 / 0.678
3fbu COAAcetyltransferase, GNAT family / 0.678
3r96 ACOMccE protein / 0.678
3sxn COAN-acetyltransferase Eis / 0.678
3to6 LYS_CMCHistone acetyltransferase ESA1 / 0.678
5h86 BCOHistone acetyltransferase KAT2A 2.3.1.48 0.676
4hkf ACOAlpha-tubulin N-acetyltransferase 1 / 0.674
3bj7 COADiamine acetyltransferase 1 / 0.671
3r95 ACOMccE protein / 0.671
1m4d COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.668
1mjb ACOHistone acetyltransferase ESA1 / 0.668
2fiw ACOGCN5-related N-acetyltransferase:Aminotransferase, class-II / 0.667
2ozu ACOHistone acetyltransferase KAT6A / 0.659
4bhw 01KHistone acetyltransferase p300 / 0.658
1z4r ACOHistone acetyltransferase KAT2A 2.3.1.48 0.655
2vzz SCAPutative succinyl-CoA transferase Rv0802c 2.8.3 0.655
4xnh ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.650