Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bdf 24A Proto-oncogene tyrosine-protein kinase Src 2.7.10.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2bdf 24AProto-oncogene tyrosine-protein kinase Src 2.7.10.2 0.958
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
2bdj HETProto-oncogene tyrosine-protein kinase Src 2.7.10.2 0.735
3uo5 0BXAurora kinase A 2.7.11.1 0.693
4e5f 0N7Polymerase acidic protein / 0.660
2izt 23DCasein kinase I isoform gamma-3 2.7.11.1 0.658
5dr9 SKEAurora kinase A 2.7.11.1 0.651