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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2b04 CHO Phospholipase A2, major isoenzyme 3.1.1.4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2b04 CHOPhospholipase A2, major isoenzyme 3.1.1.4 1.246
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3w5p 4OAVitamin D3 receptor / 0.741
3w5q 3KLVitamin D3 receptor / 0.727
3w5r LOAVitamin D3 receptor / 0.710
2b00 GCHPhospholipase A2, major isoenzyme 3.1.1.4 0.704
1osv CHCBile acid receptor / 0.686
3w5t LHPVitamin D3 receptor / 0.678
2aa6 STRMineralocorticoid receptor / 0.670
2piq DHTAndrogen receptor / 0.667
2puc GUNHTH-type transcriptional repressor PurR / 0.664
2aib ERGBeta-elicitin cinnamomin / 0.662
4nky 3QZSteroid 17-alpha-hydroxylase/17,20 lyase / 0.661
4e5f 0N7Polymerase acidic protein / 0.660
1ot7 IU5Bile acid receptor / 0.659
4lsa BLDProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.659
3cas ASD3-oxo-5-beta-steroid 4-dehydrogenase / 0.656
1xf0 ASDAldo-keto reductase family 1 member C3 / 0.655
1i7g CPQPeroxisome proliferator-activated receptor alpha / 0.652
2ab2 SNLMineralocorticoid receptor / 0.652
4ozt P1AEcdysone receptor, putative / 0.652
1p8d CO1Oxysterols receptor LXR-beta / 0.651
1o1v TCHGastrotropin / 0.650