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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2apc UDM Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase 2.4.1.101

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2apc UDMAlpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase 2.4.1.101 1.367
1foa UD1Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase 2.4.1.101 1.195
4y6u UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.718
4y9x UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.718
1n7h GDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.662
1kws UGAGalactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 / 0.658
5ccy TMPPolymerase acidic protein / 0.658
1lwx AZDNucleoside diphosphate kinase, cytosolic 2.7.4.6 0.656
3o3p GDDGlycosyl transferase, family 2 / 0.654
4typ AP5Adenylate kinase / 0.654
4o9k CMKArabinose 5-phosphate isomerase / 0.653